Evidence map›Paper›PMID 31375709›Full record

ArticleNature communications2019

Degron-tagged reporters probe membrane topology and enable the specific labelling of membrane-wrapped structures.

Katharina B Beer, Gholamreza Fazeli, Kristyna Judasova, Linda Irmisch, Jona Causemann, Jörg Mansfeld, Ann M Wehman

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Loss of lipid asymmetry facilitates plasma membrane blebbing by decreasing membrane lipid packing.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  5. Article
  6. Extracellular vesicles.Genetics · 2024
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. A chromodomain protein mediates heterochromatin-directed piRNA expression.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Katharina B BeerRudolf Virchow Center, Julius-Maximilians-Universität Würzburg, Josef-Schneider-Str. 2, 97080, Würzburg, Germany.ORCID http://orcid.org/0000-0003-1340-0305
Gholamreza FazeliRudolf Virchow Center, Julius-Maximilians-Universität Würzburg, Josef-Schneider-Str. 2, 97080, Würzburg, Germany.
Kristyna JudasovaDresden International Graduate School for Biomedicine and Bioengineering (DIGS-BB), Dresden, Germany.
Linda IrmischRudolf Virchow Center, Julius-Maximilians-Universität Würzburg, Josef-Schneider-Str. 2, 97080, Würzburg, Germany.
Jona CausemannRudolf Virchow Center, Julius-Maximilians-Universität Würzburg, Josef-Schneider-Str. 2, 97080, Würzburg, Germany.
Jörg MansfeldCell Cycle, Biotechnology Center, Technische Universität Dresden, Tatzberg 47-49, 01307, Dresden, Germany.ORCID http://orcid.org/0000-0002-0562-8206
Ann M WehmanRudolf Virchow Center, Julius-Maximilians-Universität Würzburg, Josef-Schneider-Str. 2, 97080, Würzburg, Germany. ann.wehman@uni-wuerzburg.de.ORCID http://orcid.org/0000-0001-9826-4132
University of Würzburg · DETechnische Universität Dresden · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Visualization of specific organelles in tissues over background fluorescence can be challenging, especially when reporters localize to multiple structures. Instead of trying to identify proteins enriched in specific membrane-wrapped structures, we use a selective degradation approach to remove reporters from the cytoplasm or nucleus of C. elegans embryos and mammalian cells. We demonstrate specific labelling of organelles using degron-tagged reporters, including extracellular vesicles, as well as individual neighbouring membranes. These degron-tagged reporters facilitate long-term tracking of released cell debris and cell corpses, even during uptake and phagolysosomal degradation. We further show that degron protection assays can probe the topology of the nuclear envelope and plasma membrane during cell division, giving insight into protein and organelle dynamics. As endogenous and heterologous degrons are used in bacteria, yeast, plants, and animals, degron approaches can enable the specific labelling and tracking of proteins, vesicles, organelles, cell fragments, and cells in many model systems.

Indexed as

AnimalsCaenorhabditis elegansCell MembraneEmbryo, NonmammalianExtracellular VesiclesFluorescenceGenes, ReporterHeLa CellsHumansIntravital MicroscopyLuminescent ProteinsProteolysisStaining and LabelingLuminescent Proteins

Identifiers

PMID31375709
PMCPMC6677802
OpenAlexW2964898251

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.