Evidence map›Paper›PMID 31396570›Full record

ArticleCommunications biology2019

Spatially conserved motifs in complement control protein domains determine functionality in regulators of complement activation-family proteins.

Hina Ojha, Payel Ghosh, Hemendra Singh Panwar, Rajashri Shende, Aishwarya Gondane, Shekhar C Mande, Arvind Sahu

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 22 citations in OpenAlex.

  1. βCurrent opinion in immunology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Hina Ojha1Complement Biology Laboratory, National Centre for Cell Science, S. P. Pune University campus, Pune, 411007 India.
Payel Ghosh2Bioinformatics Centre, S. P. Pune University, Pune, 411007 India.
Hemendra Singh Panwar1Complement Biology Laboratory, National Centre for Cell Science, S. P. Pune University campus, Pune, 411007 India.ORCID 0000-0003-3856-5077
Rajashri Shende1Complement Biology Laboratory, National Centre for Cell Science, S. P. Pune University campus, Pune, 411007 India.
Aishwarya Gondane2Bioinformatics Centre, S. P. Pune University, Pune, 411007 India.
Shekhar C Mande3Structural Biology Laboratory, National Centre for Cell Science, S. P. Pune University campus, Pune, 411007 India.ORCID 0000-0002-6634-0820
Arvind Sahu1Complement Biology Laboratory, National Centre for Cell Science, S. P. Pune University campus, Pune, 411007 India.ORCID 0000-0003-1664-2422
National Centre for Cell Science · INSavitribai Phule Pune University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Regulation of complement activation in the host cells is mediated primarily by the regulators of complement activation (RCA) family proteins that are formed by tandemly repeating complement control protein (CCP) domains. Functional annotation of these proteins, however, is challenging as contiguous CCP domains are found in proteins with varied functions. Here, by employing an in silico approach, we identify five motifs which are conserved spatially in a specific order in the regulatory CCP domains of known RCA proteins. We report that the presence of these motifs in a specific pattern is sufficient to annotate regulatory domains in RCA proteins. We show that incorporation of the lost motif in the fourth long-homologous repeat (LHR-D) in complement receptor 1 regains its regulatory activity. Additionally, the motif pattern also helped annotate human polydom as a complement regulator. Thus, we propose that the motifs identified here are the determinants of functionality in RCA proteins.

Indexed as

Complement ActivationAmino Acid MotifsAnimalsCell Adhesion MoleculesCnidariaComplement System ProteinsConserved SequenceHumansPhylogenyProtein ConformationProtein DomainsReceptors, Complement 3bStructure-Activity RelationshipViral ProteinsCell Adhesion MoleculesComplement System ProteinsCR1 protein, humanReceptors, Complement 3bSVEP1 protein, humanViral ProteinsBiotechnologyComplement cascade

Identifiers

PMID31396570
PMCPMC6683126
OpenAlexW2965608117

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.