Evidence map›Paper›PMID 31430856›Full record

ArticleInternational journal of molecular sciences2019

Consistent Biomarkers and Related Pathogenesis Underlying Asthma Revealed by Systems Biology Approach.

Xiner Nie, Jinyi Wei, Youjin Hao, Jingxin Tao, Yinghong Li, Mingwei Liu, Boying Xu, Bo Li

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it, 31 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Signature Proteins in Small Extracellular Vesicles of Granulocytes and CD4International journal of molecular sciences · 2024
    Article
  4. Article
  5. Article
  6. The functional role of CST1 and CCL26 in asthma development.Immunity, inflammation and disease · 2024
    Article
  7. Article
  8. Article
  9. Cells · 2022
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Xiner NieCollege of Life Sciences, Chongqing Normal University, Chongqing 401331, China.
Jinyi WeiCollege of Life Sciences, Chongqing Normal University, Chongqing 401331, China.
Youjin HaoCollege of Life Sciences, Chongqing Normal University, Chongqing 401331, China.
Jingxin TaoCollege of Life Sciences, Chongqing Normal University, Chongqing 401331, China.
Yinghong LiSchool of Biological Information, Chongqing University of Posts and Telecommunications, Chongqing 400065, China.ORCID 0000-0003-3629-519X
Mingwei LiuCollege of Laboratory Medicine, Chongqing Medical University, Chongqing 400046, China.
Boying XuCollege of Life Sciences, Chongqing Normal University, Chongqing 401331, China.
Bo LiCollege of Life Sciences, Chongqing Normal University, Chongqing 401331, China. libcell@cqnu.edu.cn.ORCID 0000-0001-9944-0003
Chongqing Normal University · CNChongqing Medical University · CNChongqing University of Posts and Telecommunications · CN

Funding

Chongqing Research Program of Basic Research and Frontier Technology, Chongqing Science & Technology Bureau cstc2016jcyjA0375
6 · The paper itself

Abstract

Asthma is a common chronic airway disease worldwide. Due to its clinical and genetic heterogeneity, the cellular and molecular processes in asthma are highly complex and relatively unknown. To discover novel biomarkers and the molecular mechanisms underlying asthma, several studies have been conducted by focusing on gene expression patterns in epithelium through microarray analysis. However, few robust specific biomarkers were identified and some inconsistent results were observed. Therefore, it is imperative to conduct a robust analysis to solve these problems. Herein, an integrated gene expression analysis of ten independent, publicly available microarray data of bronchial epithelial cells from 348 asthmatic patients and 208 healthy controls was performed. As a result, 78 up- and 75 down-regulated genes were identified in bronchial epithelium of asthmatics. Comprehensive functional enrichment and pathway analysis revealed that response to chemical stimulus, extracellular region, pathways in cancer, and arachidonic acid metabolism were the four most significantly enriched terms. In the protein-protein interaction network, three main communities associated with cytoskeleton, response to lipid, and regulation of response to stimulus were established, and the most highly ranked 6 hub genes (up-regulated

Indexed as

AsthmaBiomarkersGene Expression RegulationGene Regulatory NetworksHumansProtein Interaction MapsSystems BiologyTranscriptomeBiomarkersAsthmaBiomarkerData integratingEpithelial cellsGene set enrichment analysisProtein-protein interaction network.

Identifiers

PMID31430856
PMCPMC6720652
OpenAlexW2967602078

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.