Evidence map›Paper›PMID 31461863›Full record

ArticleInternational journal of molecular sciences2019

Development of Multi-Target Chemometric Models for the Inhibition of Class I PI3K Enzyme Isoforms: A Case Study Using QSAR-Co Tool.

Amit Kumar Halder, M Natália Dias Soeiro Cordeiro

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Computational toxicology (Amsterdam, Netherlands) · 2021
    Article
  8. Review
  9. Article
  10. AKT Inhibitors: The Road Ahead to Computational Modeling-Guided Discovery.International journal of molecular sciences · 2021
    Article
  11. QSPR/QSAR: State-of-Art, Weirdness, the Future.Molecules (Basel, Switzerland) · 2020
    Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Amit Kumar HalderDepartment of Chemistry and Biochemistry, University of Porto, 4169-007 Porto, Portugal.
M Natália Dias Soeiro CordeiroDepartment of Chemistry and Biochemistry, University of Porto, 4169-007 Porto, Portugal. ncordeir@fc.up.pt.ORCID 0000-0003-3375-8670

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The present work aims at establishing multi-target chemometric models using the recently launched quantitative structure-activity relationship (QSAR)-Co tool for predicting the activity of inhibitor compounds against different isoforms of phosphoinositide 3-kinase (PI3K) under various experimental conditions. The inhibitors of class I phosphoinositide 3-kinase (PI3K) isoforms have emerged as potential therapeutic agents for the treatment of various disorders, especially cancer. The cell-based enzyme inhibition assay results of PI3K inhibitors were curated from the CHEMBL database. Factors such as the nature and mutation of cell lines that may significantly alter the assay outcomes were considered as important experimental elements for mt-QSAR model development. The models, in turn, were developed using two machine learning techniques as implemented in QSAR-Co: linear discriminant analysis (LDA) and random forest (RF). Both techniques led to models with high accuracy (ca. 90%). Several molecular fragments were extracted from the current dataset, and their quantitative contributions to the inhibitory activity against all the proteins and experimental conditions under study were calculated. This case study also demonstrates the utility of QSAR-Co tool in solving multi-factorial and complex chemometric problems. Additionally, the combination of different in silico methods employed in this work can serve as a valuable guideline to speed up early discovery of PI3K inhibitors.

Indexed as

Quantitative Structure-Activity RelationshipHumansIsoenzymesPhosphatidylinositol 3-KinasesPhosphoinositide-3 Kinase InhibitorsIsoenzymesPhosphatidylinositol 3-KinasesPhosphoinositide-3 Kinase Inhibitorscancerlinear discriminant analysismulti-target modelsPI3K inhibitorsQSARrandom forest

Identifiers

PMID31461863
PMCPMC6747073

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.