Evidence map›Paper›PMID 31487296›Full record

ArticlePloS one2019

Association between polymorphisms in PRNCR1 and risk of colorectal cancer in the Saudi population.

Mohammad AlMutairi, Narasimha Reddy Parine, Jilani Purusottapatnam Shaik, Sooad Aldhaian, Nahla A Azzam, Abdulrahman M Aljebreen, Othman Alharbi, Majid A Almadi, Amal O Al-Balbeesi, Mohammad Alanazi

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 29 citations in OpenAlex.

  1. Review
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  8. Sex Differences in the Incidence of Obesity-Related Gastrointestinal Cancer.International journal of molecular sciences · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Mohammad AlMutairiGenome Research Chair, Department of Biochemistry, College of Science King Saud University, Riyadh, Kingdom of Saudi Arabia.
Narasimha Reddy ParineGenome Research Chair, Department of Biochemistry, College of Science King Saud University, Riyadh, Kingdom of Saudi Arabia.ORCID 0000-0002-0765-9022
Jilani Purusottapatnam ShaikGenome Research Chair, Department of Biochemistry, College of Science King Saud University, Riyadh, Kingdom of Saudi Arabia.
Sooad AldhaianGenome Research Chair, Department of Biochemistry, College of Science King Saud University, Riyadh, Kingdom of Saudi Arabia.
Nahla A AzzamCollege of Medicine, King Saud University, Riyadh, Kingdom of Saudi Arabia.
Abdulrahman M AljebreenCollege of Medicine, King Saud University, Riyadh, Kingdom of Saudi Arabia.
Othman AlharbiCollege of Medicine, King Saud University, Riyadh, Kingdom of Saudi Arabia.
Majid A AlmadiCollege of Medicine, King Saud University, Riyadh, Kingdom of Saudi Arabia.
Amal O Al-BalbeesiDepartment of Dermatology, King Khalid University Hospital, King Saud University, King Saud University, Riyadh, Kingdom of Saudi Arabia.
Mohammad AlanaziGenome Research Chair, Department of Biochemistry, College of Science King Saud University, Riyadh, Kingdom of Saudi Arabia.
King Saud University · SA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

LncRNA Prostate cancer non-coding RNA (PRNCR1) is downregulated in many types of cancer. The current case-control study was performed on 144 patients with colorectal cancer and 130 matching controls. Genotyping was performed using TaqMan assays for four Single Nucleotide Polymorphisms (SNPs) in PRNCR1. RNAsnp Web Server was used to detect variations in the secondary structure for each SNP. The genotyping analysis for SNP rs1456315 showed increased association with colorectal cancer with the homozygous CC variant allele (OR: 2.09; χ2 = 4.95; CI: 1.08-4.02; p = 0.02), the minor allele frequency, and additive genotype, respectively (OR: 1.55; χ2 = 6.24; CI: 1.09-2.19; p = 0.01) & (OR: 1.64; χ2 = 4.04; CI: 1.01-2.67; p = 0.04). A risk association was also observed among younger age patients (≤57) and in female patients as well as in patients with tumors of the colon. For the other SNPs tested (rs16901946, rs13252298, rs1016343), no significant association was observed. The secondary structure of the rs1456315 mutant is different from that of the wild-type. Our findings suggest that the upregulation of PRNCR1 and its variants is associated with increased risk of colorectal cancer in Saudi patients, indicating that PRNCR1 might be a unique and valuable signature for predicting the risk of colorectal cancer in a Saudi population.

Indexed as

Genetic Predisposition to DiseasePolymorphism, Single NucleotideAgedAllelesColorectal NeoplasmsFemaleGenetic Association StudiesGenotypeHumansLinkage DisequilibriumMaleMiddle AgedNeoplasm StagingNucleic Acid ConformationOdds RatioRNA, Long NoncodingPRNCR1 long non-coding RNA, humanRNA, Long Noncoding

Identifiers

PMID31487296
PMCPMC6728072
OpenAlexW2971413546

What Socratic holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.