Evidence map›Paper›PMID 31493648›Full record

ArticleVirology2019

Human Herpes Simplex Virus-1 depletes APOBEC3A from nuclei.

Jessica A Stewart, Thomas C Holland, Ashok S Bhagwat

Open access · greenAbstract read
In one paragraph

Article in Virology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
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  4. Review
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  10. GJournal of virology · 2022
    Article
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  17. Retroviruses drive the rapid evolution of mammalianProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Jessica A StewartDepartment of Chemistry, Wayne State University, Detroit, MI, 48202, USA.
Thomas C HollandDepartment of Biochemistry, Microbiology and Immunology, Wayne State University School of Medicine, Detroit, MI, 48201, USA.
Ashok S BhagwatDepartment of Chemistry, Wayne State University, Detroit, MI, 48202, USA; Department of Biochemistry, Microbiology and Immunology, Wayne State University School of Medicine, Detroit, MI, 48201, USA. Electronic address: axb@chem.wayne.edu.
Wayne State University · US

Funding

TRANSCRIPTION--INDUCED MUTATIONSR01GM057200 · NIGMS · WAYNE STATE UNIVERSITY · PI BHAGWAT, ASHOK S · 1998 to 2014
$2.6M
Mapping and Visualizing Uracils Created by AID/APOBEC Enzymes using UdgXR21AI144708 · NIAID · WAYNE STATE UNIVERSITY · PI BHAGWAT, ASHOK S · 2019 to 2020
$398k
NIAID NIH HHS R21 AI144708NIGMS NIH HHS R01 GM057200
6 · The paper itself

Abstract

APOBEC3 family of DNA-cytosine deaminases inactivate and mutate several human viruses. We constructed a human cell line that is inducible for EGFP-tagged APOBEC3A and found A3A predominantly in the nuclei. When these cells were infected with Herpes Simplex Virus-1, virus titer was unaffected by A3A expression despite nuclear virus replication. When A3A expression and virus infection were monitored, A3A was found predominantly to be nuclear in infected cells up to 3 h post-infection, but was predominantly cytoplasmic by 12 h. This effect did not require the whole virus, and could be reproduced using the UL39 gene of the virus which codes for a subunit of the viral ribonucleotide reductase. These results are similar to the reported exclusion of APOBEC3B by Epstein Barr virus ortholog of UL39, BORF2, but HSV1 UL39 gene product appears better at excluding A3A than A3B from nuclei.

Indexed as

AnimalsCell NucleusChlorocebus aethiopsCytidine DeaminaseCytoplasmGreen Fluorescent ProteinsHeLa CellsHerpesvirus 1, HumanHumansImmunologic FactorsProteinsRecombinant Fusion ProteinsStaining and LabelingVero CellsViral ProteinsAPOBEC3A protein, humanCytidine Deaminaseenhanced green fluorescent proteinGreen Fluorescent ProteinsImmunologic FactorsProteinsRecombinant Fusion ProteinsViral ProteinsAntiviral responseCytidine deaminaseEvasion of innate antiviral immunityInnate immunity

Identifiers

PMID31493648
PMCPMC6901759
OpenAlexW2967537608

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.