Evidence map›Paper›PMID 31578828›Full record

ArticleMolecular genetics & genomic medicine2019

Gene-level genome-wide association analysis of suicide attempt, a preliminary study in a psychiatric Mexican population.

Thelma Beatriz González-Castro, José Jaime Martínez-Magaña, Carlos Alfonso Tovilla-Zárate, Isela Esther Juárez-Rojop, Emmanuel Sarmiento, Alma Delia Genis-Mendoza, Humberto Nicolini

Open access · goldAbstract readMulticenter Study
In one paragraph

Article in Molecular genetics & genomic medicine, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 3 pooled it
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 3 syntheses or guidelines pooled it, 25 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Genetics and epigenetics of self-injurious thoughts and behaviors: Systematic review of the suicide literature and methodological considerations.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2022
    Pooled it
  4. Review
  5. Review
  6. Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Catalytic Reaction Model of Suicide.Frontiers in psychiatry · 2022
    Review
  12. Review
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Thelma Beatriz González-CastroDivisión Académica Multidisciplinaria de Jalpa de Méndez, Universidad Juárez Autónoma de Tabasco, Mexico City, Mexico.ORCID 0000-0001-8046-6908
José Jaime Martínez-MagañaDivisión Académica Multidisciplinaria de Ciencias de la Salud, Universidad Juárez Autónoma de Tabasco, Villahermosa, Mexico.ORCID 0000-0003-0390-8252
Carlos Alfonso Tovilla-ZárateDivisión Académica Multidisciplinaria de Comalcalco, Universidad Juárez Autónoma de Tabasco, Comalcalco, Mexico.ORCID 0000-0001-8170-8171
Isela Esther Juárez-RojopDivisión Académica Multidisciplinaria de Ciencias de la Salud, Universidad Juárez Autónoma de Tabasco, Villahermosa, Mexico.
Emmanuel SarmientoHospital Psiquiátrico Infantil "Dr. Juan N. Navarro", Mexico City, Mexico.
Alma Delia Genis-MendozaInstituto Nacional de Medicina Genómica (INMEGEN), Secretaria de Salud, Mexico City, Mexico.ORCID 0000-0001-8180-477X
Humberto NicoliniInstituto Nacional de Medicina Genómica (INMEGEN), Secretaria de Salud, Mexico City, Mexico.ORCID 0000-0003-2494-0067
Universidad Juárez Autónoma de Tabasco · MXHospital Psiquiatrico Infantil Juan N Navarro · MXSecretaria de Salud · MX

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundEvidence suggests that liability for suicide behavior is heritable; additionally, suicide has been partly related to other psychiatric disorders. Nevertheless, most of the information reported so far address Caucasian and Asian individuals. Hence, our aim was to conduct a gene-level association study in Mexican psychiatric individuals diagnosed with suicide attempt.

methodsWe recruited 192 individuals from two clinical centers in Mexico. All participants were born in Mexico and had Mexican parents and grandparents. Direct genotyping was performed using the commercial platform Infinium PsychArray BeadChip. A p-value lower than 1e-05 was considered as gene-level significant and a p-value lower than 1e-04 was considered as gene-level nominal significant.

resultsOur analyses showed that SCARA5 was associated to suicide intent at a gene-level with statistical significance (p-value = 1.12e-6). Other genes were nominally associated with suicide attempt: GHSR (p-value = 0.0004), RGS10 (p-value = 5.13e-5), and STK33 (p-value = 3.62e-5). Regarding gene variant analyses, the SNPs with a statistical association (p > .05) were rs561361616, rs1537577, rs11198999 for RGS10, and rs11041981, rs11041993, rs11041994, rs11041995, rs11041997, rs10840083, rs10769918 for STK33. For these genes, previous studies have associated SCARA5 with depression, GHSR with alcohol dependence and depression, and RGS10 with schizophrenia and depression. To date, STK33 has not been associated with any psychiatric disorder.

conclusionOur outcomes revealed that SCARA5, GHSR, RGS10 and STK33 could be considered as risk biomarkers for suicide attempt behavior in our Mexican psychiatric sample. We recommend to perform larger scale analyses to have conclusive results.

Indexed as

Polymorphism, Single NucleotideAdultGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansMexicoMiddle AgedProtein Serine-Threonine KinasesReceptors, GhrelinRGS ProteinsScavenger Receptors, Class ASuicide, AttemptedYoung AdultProtein Serine-Threonine KinasesReceptors, GhrelinRGS10 protein, humanRGS ProteinsSCARA5 protein, humanScavenger Receptors, Class ASTK33 protein, humangenome-wideMexican populationpsychiatrics diseasessuicide attempt

Identifiers

PMID31578828
PMCPMC6900393
OpenAlexW2977949965

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.