Evidence map›Paper›PMID 31586401›Full record

ArticleNucleic acids research2019

Histone deacetylase 3 controls a transcriptional network required for B cell maturation.

Kristy R Stengel, Srividya Bhaskara, Jing Wang, Qi Liu, Jacob D Ellis, Shilpa Sampathi, Scott W Hiebert

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Kristy R StengelDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN 37232, USA.
Srividya BhaskaraDepartment of Radiation Oncology and Oncological Sciences, Univ. of Utah School of Medicine and the Huntsman Cancer Institute, Salt Lake City, UT, USA.
Jing WangDepartment of Biostatistics, Vanderbilt School of Medicine, Nashville, TN 37203, USA.
Qi LiuDepartment of Biostatistics, Vanderbilt School of Medicine, Nashville, TN 37203, USA.
Jacob D EllisDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN 37232, USA.
Shilpa SampathiDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN 37232, USA.
Scott W HiebertDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN 37232, USA.
Vanderbilt University · USHuntsman Cancer Institute · USVanderbilt University Medical Center · US

Funding

Tumor Immunology and Microenvironment Research ProgramP30CA068485 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Ben Ho Park · 1995 to 2026
$172.8M
Translational Analysis CoreP30DK058404 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI MARY Kay WASHINGTON · 2002 to 2026
$29.9M
BIOCHEMICAL &CHEMICAL TRAINING FOR CANCER RESEARCHT32CA009582 · NCI · VANDERBILT UNIVERSITY · PI David K Cortez · 1987 to 2026
$8.8M
Role of AML1-ETO in Acute LeukemiaR01CA064140 · NCI · VANDERBILT UNIVERSITY · PI HIEBERT, SCOTT W · 1994 to 2018
$5.7M
Hdac3 as a therapeutic target in BCL6-dependent lymphomaR01CA164605 · NCI · VANDERBILT UNIVERSITY · PI HIEBERT, SCOTT W · 2012 to 2022
$3.9M
Regulation of transcription and tumor suppression by MTG family membersR01CA178030 · NCI · VANDERBILT UNIVERSITY · PI HIEBERT, SCOTT W · 2014 to 2018
$1.8M
Histone deacetylases 1,2 and DNA repairR01CA188520 · NCI · UNIVERSITY OF UTAH · PI BHASKARA, SRIVIDYA · 2015 to 2019
$1.7M
NCI NIH HHS P30 CA068485NCI NIH HHS R01 CA064140NCI NIH HHS R01 CA164605NCI NIH HHS R01 CA178030NCI NIH HHS R01 CA188520NCI NIH HHS T32 CA009582NIDDK NIH HHS P30 DK058404
6 · The paper itself

Abstract

Histone deacetylase 3 (Hdac3) is a target of the FDA approved HDAC inhibitors, which are used for the treatment of lymphoid malignancies. Here, we used Cd19-Cre to conditionally delete Hdac3 to define its role in germinal center B cells, which represent the cell of origin for many B cell malignancies. Cd19-Cre-Hdac3-/- mice showed impaired germinal center formation along with a defect in plasmablast production. Analysis of Hdac3-/- germinal centers revealed a reduction in dark zone centroblasts and accumulation of light zone centrocytes. RNA-seq revealed a significant correlation between genes up-regulated upon Hdac3 loss and those up-regulated in Foxo1-deleted germinal center B cells, even though Foxo1 typically activates transcription. Therefore, to determine whether gene expression changes observed in Hdac3-/- germinal centers were a result of direct effects of Hdac3 deacetylase activity, we used an HDAC3 selective inhibitor and examined nascent transcription in germinal center-derived cell lines. Transcriptional changes upon HDAC3 inhibition were enriched for light zone gene signatures as observed in germinal centers. Further comparison of PRO-seq data with ChIP-seq/exo data for BCL6, SMRT, FOXO1 and H3K27ac identified direct targets of HDAC3 function including CD86, CD83 and CXCR5 that are likely responsible for driving the light zone phenotype observed in vivo.

Indexed as

Gene Regulatory NetworksTranscription, GeneticAnimalsAntigens, CD19Base SequenceB-LymphocytesCell DifferentiationGene Expression RegulationHistone Deacetylase 3Histone Deacetylase InhibitorsHistone DeacetylasesLipopolysaccharidesLymphocyte ActivationMice, Inbred C57BLPlasma CellsPositive Regulatory Domain I-Binding Factor 1Antigens, CD19Bcl6 protein, mouseHistone Deacetylase 3Histone Deacetylase InhibitorsHistone DeacetylasesLipopolysaccharidesPositive Regulatory Domain I-Binding Factor 1Prdm1 protein, mouseProto-Oncogene Proteins c-bcl-6Repressor Proteins

Identifiers

PMID31586401
PMCPMC6847391
OpenAlexW2978260629

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.