Evidence map›Paper›PMID 31623972›Full record

ReviewAdvances in biological regulation2020

Cellular signaling and epigenetic regulation of gene expression in leukemia.

Chandrika Gowda, Chunhua Song, Yali Ding, Soumya Iyer, Pavan K Dhanyamraju, Mary McGrath, Yevgeniya Bamme, Mario Soliman, Shriya Kane, Jonathon L Payne and 1 more

Open access · hybridAbstract readReview
In one paragraph

Review in Advances in biological regulation, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
  2. IKAROS in Acute Leukemia: A Positive Influencer or a Mean Hater?International journal of molecular sciences · 2023
    Review
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Cereblon Based Immunomodulatory Therapeutics.ACS medicinal chemistry letters · 2020
    Article
  13. Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Chandrika GowdaDepartment of Pediatrics, Pennsylvania State University College of Medicine, Hershey, PA, USA.
Chunhua SongDepartment of Pediatrics, Pennsylvania State University College of Medicine, Hershey, PA, USA.
Yali DingDepartment of Pediatrics, Pennsylvania State University College of Medicine, Hershey, PA, USA.
Soumya IyerDepartment of Pediatrics, Pennsylvania State University College of Medicine, Hershey, PA, USA.
Pavan K DhanyamrajuDepartment of Pediatrics, Pennsylvania State University College of Medicine, Hershey, PA, USA.
Mary McGrathDepartment of Pediatrics, Pennsylvania State University College of Medicine, Hershey, PA, USA.
Yevgeniya BammeDepartment of Pediatrics, Pennsylvania State University College of Medicine, Hershey, PA, USA.
Mario SolimanDepartment of Pediatrics, Pennsylvania State University College of Medicine, Hershey, PA, USA.
Shriya KaneDepartment of Pediatrics, Pennsylvania State University College of Medicine, Hershey, PA, USA.
Jonathon L PayneDepartment of Pediatrics, Pennsylvania State University College of Medicine, Hershey, PA, USA.
Sinisa DovatDepartment of Pediatrics, Pennsylvania State University College of Medicine, Hershey, PA, USA. Electronic address: sdovat@pennstatehealth.psu.edu.
Pennsylvania State University · US

Funding

Penn State Clinical and Translational Science InstituteUL1TR002014 · NCATS · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI KRASCHNEWSKI, JENNIFER L. · 2016 to 2025
$33.7M
Penn State Institutional Career Development CoreKL2TR002015 · NCATS · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI VAN SCOY, LAUREN JODI · 2016 to 2025
$7.8M
Targeting CRLF2 and Ikaros Alterations to Reduce Health Disparities in Childhood LeukemiaR01CA209829 · NCI · LOMA LINDA UNIVERSITY · PI DOVAT, SINISA, DUERKSEN-HUGHES, PENELOPE J · 2016 to 2020
$2.0M
Targeting CK2 oncogenic pathway to overcome drug resistance in high-risk leukemiaR01CA213912 · NCI · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI DOVAT, SINISA · 2017 to 2021
$1.8M
Epigenetic Regulation in High-Risk LeukemiaF30CA221109 · NCI · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI PAYNE, JONATHON · 2017 to 2020
$197k
NCATS NIH HHS KL2 TR002015NCATS NIH HHS UL1 TR002014NCI NIH HHS F30 CA221109NCI NIH HHS R01 CA209829NCI NIH HHS R01 CA213912
6 · The paper itself

Abstract

Alterations in normal regulation of gene expression is one of the key features of hematopoietic malignancies. In order to gain insight into the mechanisms that regulate gene expression in these diseases, we dissected the role of the Ikaros protein in leukemia. Ikaros is a DNA-binding, zinc finger protein that functions as a transcriptional regulator and a tumor suppressor in leukemia. The use of ChIP-seq, RNA-seq, and ATAC-seq-coupled with functional experiments-revealed that Ikaros regulates both the global epigenomic landscape and epigenetic signature at promoter regions of its target genes. Casein kinase II (CK2), an oncogenic kinase that is overexpressed in leukemia, directly phosphorylates Ikaros at multiple, evolutionarily-conserved residues. Phosphorylation of Ikaros impairs the protein's ability to regulate both the transcription of its target genes and global epigenetic landscape in leukemia. Treatment of leukemia cells with a specific inhibitor of CK2 restores Ikaros function, resulting in cytotoxicity of leukemia cells. Here, we review the mechanisms through which the CK2-Ikaros signaling axis regulates the global epigenomic landscape and expression of genes that control cellular proliferation in leukemia.

Indexed as

Epigenesis, GeneticGene Expression Regulation, LeukemicHematologic NeoplasmsLeukemiaNeoplasm ProteinsSignal TransductionCell ProliferationHumansNeoplasm ProteinsCasein kinase II (CK2) inhibitor CX-4945Epigenetic regulationGene transcriptionIkarosLeukemiaTumor suppressor

Identifiers

PMID31623972
PMCPMC7239353
OpenAlexW2979254338

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.