Evidence map›Paper›PMID 31640433›Full record

ArticleLeukemia & lymphoma2020

Overexpression of chromatin remodeling and tyrosine kinase genes in iAMP21-positive acute lymphoblastic leukemia.

Ingegerd Ivanov Öfverholm, Vasilios Zachariadis, Fulya Taylan, Yanara Marincevic-Zuniga, Anh Nhi Tran, Leonie Saft, Daniel Nilsson, Ann-Christine Syvänen, Gudmar Lönnerholm, Arja Harila-Saari and 5 more

Open access · bronzeAbstract read
PubMed Publisher
In one paragraph

Article in Leukemia & lymphoma, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.1field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

  • Commented on by
    2020
5 · Who and what money

Authors and funding

15 authors at 3 institutions in 1 country.

Ingegerd Ivanov ÖfverholmDepartment of Molecular Medicine and Surgery and Center for Molecular Medicine, Karolinska Institutet, Stockholm, Sweden.ORCID 0000-0002-6907-8004
Vasilios ZachariadisDepartment of Oncology-Pathology, Karolinska Institutet, Stockholm, Sweden.ORCID 0000-0001-9360-9859
Fulya TaylanDepartment of Molecular Medicine and Surgery and Center for Molecular Medicine, Karolinska Institutet, Stockholm, Sweden.ORCID 0000-0002-2907-0235
Yanara Marincevic-ZunigaDepartment of Medical Sciences, Molecular Medicine and Science for Life Laboratory, Uppsala University, Uppsala, Sweden.ORCID 0000-0001-5576-2115
Anh Nhi TranDepartment of Molecular Medicine and Surgery and Center for Molecular Medicine, Karolinska Institutet, Stockholm, Sweden.
Leonie SaftDepartment of Pathology, Karolinska University Hospital, Stockholm, Sweden.
Daniel NilssonDepartment of Molecular Medicine and Surgery and Center for Molecular Medicine, Karolinska Institutet, Stockholm, Sweden.ORCID 0000-0001-5831-385X
Ann-Christine SyvänenDepartment of Medical Sciences, Molecular Medicine and Science for Life Laboratory, Uppsala University, Uppsala, Sweden.
Gudmar LönnerholmDepartment of Women's and Children's Health, Uppsala University, Uppsala, Sweden.
Arja Harila-SaariDepartment of Women's and Children's Health, Karolinska Institutet, Karolinska University Hospital Solna, Stockholm, Sweden.
Magnus NordenskjöldDepartment of Molecular Medicine and Surgery and Center for Molecular Medicine, Karolinska Institutet, Stockholm, Sweden.ORCID 0000-0002-4974-425X
Mats HeymanDepartment of Women's and Children's Health, Karolinska Institutet, Karolinska University Hospital Solna, Stockholm, Sweden.
Ann NordgrenDepartment of Molecular Medicine and Surgery and Center for Molecular Medicine, Karolinska Institutet, Stockholm, Sweden.ORCID 0000-0003-3285-4281
Jessica NordlundDepartment of Medical Sciences, Molecular Medicine and Science for Life Laboratory, Uppsala University, Uppsala, Sweden.ORCID 0000-0001-8699-9959
Gisela BarbanyDepartment of Molecular Medicine and Surgery and Center for Molecular Medicine, Karolinska Institutet, Stockholm, Sweden.
Karolinska University Hospital · SEUppsala University · SEKarolinska Institutet · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Intrachromosomal amplification of chromosome 21 (iAMP21) is a cytogenetic subtype associated with relapse and poor prognosis in pediatric B-cell precursor acute lymphoblastic leukemia (BCP ALL). The biology behind the high relapse risk is unknown and the aim of this study was to further characterize the genomic and transcriptional landscape of iAMP21. Using DNA arrays and sequencing, we could identify rearrangements and aberrations characteristic for iAMP21. RNA sequencing revealed that only half of the genes in the minimal region of amplification (20/45) were differentially expressed in iAMP21. Among them were the top overexpressed genes (

Indexed as

Precursor Cell Lymphoblastic Leukemia-LymphomaProtein-Tyrosine KinasesChildChromatin Assembly and DisassemblyChromatin Assembly Factor-1Chromosome AberrationsCytogeneticsHumansCHAF1B protein, humanChromatin Assembly Factor-1Protein-Tyrosine KinasesAcute lymphoblastic leukemiagene expression analysisiAMP21MP-WGStranscriptome sequencing

Identifiers

PMID31640433
OpenAlexW2981356360

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.