Evidence map›Paper›PMID 31653946›Full record

ArticleScientific reports2019

Genome-wide differential expression profiling of lncRNAs and mRNAs associated with early diabetic cardiomyopathy.

Tarun Pant, Anuradha Dhanasekaran, Xiaowen Bai, Ming Zhao, Edward B Thorp, Joseph M Forbess, Zeljko J Bosnjak, Zhi-Dong Ge

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 30 citations in OpenAlex.

  1. Review
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  3. Posttranscriptional Regulation by Proteins and Noncoding RNAs.Advances in experimental medicine and biology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Tarun PantDepartments of Medicine, Medical College of Wisconsin, 8701 Watertown Plank Road, Milwaukee, Wisconsin, 53226, USA.
Anuradha DhanasekaranCentre for Biotechnology, Anna University, Chennai, Tamil Nadu, 600025, India.
Xiaowen BaiPhysiology, Medical College of Wisconsin, 8701 Watertown Plank Road, Milwaukee, Wisconsin, 53226, USA.
Ming ZhaoDivision of Cardiology, Department of Medicine, Feinberg School of Medicine, Northwestern University, 300 E. Superior Avenue, Chicago, Illinois, 60611, USA.
Edward B ThorpDepartment of Pathology, Feinberg School of Medicine, Northwestern University, 300 E. Superior Avenue, Chicago, Illinois, 60611, USA.ORCID http://orcid.org/0000-0003-1387-7058
Joseph M ForbessDepartments of Surgery and Pediatrics, Ann & Robert H. Lurie Children's Hospital of Chicago, Feinberg School of Medicine, Northwestern University, 225 E. Chicago Avenue, Chicago, Illinois, 60611, USA.
Zeljko J BosnjakDepartments of Medicine, Medical College of Wisconsin, 8701 Watertown Plank Road, Milwaukee, Wisconsin, 53226, USA.
Zhi-Dong GeDepartments of Surgery and Pediatrics, Ann & Robert H. Lurie Children's Hospital of Chicago, Feinberg School of Medicine, Northwestern University, 225 E. Chicago Avenue, Chicago, Illinois, 60611, USA. zhi-dong.ge@northwestern.edu.ORCID http://orcid.org/0000-0002-7045-0846
Northwestern University · USMedical College of Wisconsin · USAnna University, Chennai · IN

Funding

Stem Cell CoreP01GM066730 · NIGMS · MEDICAL COLLEGE OF WISCONSIN · PI DASH, RANJAN K · 2003 to 2019
$23.6M
microRNAs and Anesthetic-Induced Developmental NeurotoxicityR01GM112696 · NIGMS · MEDICAL COLLEGE OF WISCONSIN · PI BAI, XIAOWEN · 2014 to 2022
$3.0M
NIGMS NIH HHS P01 GM066730NIGMS NIH HHS R01 GM112696
6 · The paper itself

Abstract

Diabetic cardiomyopathy is one of the main causes of heart failure and death in patients with diabetes. There are no effective approaches to preventing its development in the clinic. Long noncoding RNAs (lncRNA) are increasingly recognized as important molecular players in cardiovascular disease. Herein we investigated the profiling of cardiac lncRNA and mRNA expression in type 2 diabetic db/db mice with and without early diabetic cardiomyopathy. We found that db/db mice developed cardiac hypertrophy with normal cardiac function at 6 weeks of age but with a decreased diastolic function at 20 weeks of age. LncRNA and mRNA transcripts were remarkably different in 20-week-old db/db mouse hearts compared with both nondiabetic and diabetic controls. Overall 1479 lncRNA transcripts and 1109 mRNA transcripts were aberrantly expressed in 6- and 20-week-old db/db hearts compared with nondiabetic controls. The lncRNA-mRNA co-expression network analysis revealed that 5 deregulated lncRNAs having maximum connections with differentially expressed mRNAs were BC038927, G730013B05Rik, 2700054A10Rik, AK089884, and Daw1. Bioinformatics analysis revealed that these 5 lncRNAs are closely associated with membrane depolarization, action potential conduction, contraction of cardiac myocytes, and actin filament-based movement of cardiac cells. This study profiles differently expressed lncRNAs in type 2 mice with and without early diabetic cardiomyopathy and identifies BC038927, G730013B05Rik, 2700054A10Rik, AK089884, and Daw1 as the core lncRNA with high significance in diabetic cardiomyopathy.

Indexed as

Gene Expression ProfilingGene Expression RegulationGenomeAnimalsBlood GlucoseBody WeightDiabetes Mellitus, ExperimentalDiabetic CardiomyopathiesDown-RegulationGene OntologyGene Regulatory NetworksHeart VentriclesHemodynamicsMaleMice, Inbred C57BLReproducibility of ResultsBlood GlucoseRNA, Long NoncodingRNA, Messenger

Identifiers

PMID31653946
PMCPMC6814824
OpenAlexW2981963255

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.