Evidence map›Paper›PMID 31740798›Full record

ArticleNature immunology2019

RNA-binding protein isoforms ZAP-S and ZAP-L have distinct antiviral and immune resolution functions.

Johannes Schwerk, Frank W Soveg, Andrew P Ryan, Kerri R Thomas, Lauren D Hatfield, Snehal Ozarkar, Adriana Forero, Alison M Kell, Justin A Roby, Lomon So and 4 more

Open access · greenAbstract read
In one paragraph

Article in Nature immunology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 88 papers.

0numbers the graph read from it
0cells of the map it votes in
88citing papers in PubMed
5.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

88 citing papers in PubMed, 126 citations in OpenAlex.

  1. Trial
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  11. Review
  12. PARP9-PARP13-PARP14 axis tunes colorectal cancer response to radiotherapy.Journal of experimental & clinical cancer research : CR · 2025
    Article
  13. Host ZAP activity correlates with the levels of CpG suppression in primate lentiviruses.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  14. Human long noncoding RNAJournal of virology · 2025
    Article
  15. Synthetic RIG-I-Agonist RNA Induces Death of Hepatocellular Carcinoma Cells.Journal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research · 2025
    Article
  16. Modulation of host gene expression by the zinc finger antiviral protein.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  17. Review
  18. Article
  19. Article
  20. Review

28 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 2 countries.

Johannes Schwerk *Department of Immunology, School of Medicine, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0002-5964-7162
Frank W Soveg *Department of Immunology, School of Medicine, University of Washington, Seattle, WA, USA.
Andrew P RyanSection of Molecular Biology, Division of Biological Sciences, University of California San Diego, La Jolla, CA, USA.
Kerri R ThomasDepartment of Immunology, School of Medicine, University of Washington, Seattle, WA, USA.
Lauren D HatfieldDepartment of Immunology, School of Medicine, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0003-0095-9863
Snehal OzarkarDepartment of Immunology, School of Medicine, University of Washington, Seattle, WA, USA.
Adriana ForeroDepartment of Immunology, School of Medicine, University of Washington, Seattle, WA, USA.
Alison M KellDepartment of Immunology, School of Medicine, University of Washington, Seattle, WA, USA.
Justin A RobyDepartment of Immunology, School of Medicine, University of Washington, Seattle, WA, USA.
Lomon SoDepartment of Immunology, School of Medicine, University of Washington, Seattle, WA, USA.
Jennifer L HydeDepartment of Microbiology, School of Medicine, University of Washington, Seattle, WA, USA.
Michael GaleDepartment of Immunology, School of Medicine, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0002-6332-7436
Matthew D DaughertySection of Molecular Biology, Division of Biological Sciences, University of California San Diego, La Jolla, CA, USA. mddaugherty@ucsd.edu.ORCID http://orcid.org/0000-0002-4879-9603
Ram SavanDepartment of Immunology, School of Medicine, University of Washington, Seattle, WA, USA. savanram@uw.edu.ORCID http://orcid.org/0000-0002-3087-1355
University of Washington · USUniversity of California San Diego · USVirginia Mason Medical Center · US

Funding

GENETIC MECHANISMS AND REGULATIONT32GM007240 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HAMPTON, RANDOLPH Y. · 1985 to 2019
$23.8M
TRAINING IN MOLECULAR AND CELLULAR BIOLOGYT32GM007270 · NIGMS · UNIVERSITY OF WASHINGTON · PI RAIBLE, DAVID W · 1985 to 2020
$21.0M
Microtubule Dynamics and Chromosome SegregationR01GM069429 · NIGMS · UNIVERSITY OF WASHINGTON · PI WORDEMAN, LINDA · 2004 to 2020
$5.6M
Innate Immune Control of West Nile VirusR01AI104002 · NIAID · UNIVERSITY OF WASHINGTON · PI DIAMOND, MICHAEL S, GALE, MICHAEL · 2013 to 2017
$3.7M
Pathogen-driven evolution of innate antiviral defense mechanismsR35GM133633 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Matthew Daugherty · 2019 to 2026
$3.3M
Mechanisms of hepatic innate immune activation by HCVR01AI127463 · NIAID · UNIVERSITY OF WASHINGTON · PI GALE, MICHAEL, ROSEN, HUGO RAMON · 2017 to 2021
$2.8M
The Host Response to Hepatitis C VirusR01AI118916 · NIAID · UNIVERSITY OF WASHINGTON · PI GALE, MICHAEL · 2016 to 2020
$2.5M
Novel regulatory mechanisms control IFNL3 expression during HCV infectionR01AI108765 · NIAID · UNIVERSITY OF WASHINGTON · PI SAVAN, RAM · 2014 to 2018
$2.3M
Basic Training at the Intersection of Innate and Adaptive Immunity in DiseaseT32AI106677 · NIAID · UNIVERSITY OF WASHINGTON · PI GALE, MICHAEL, GOVERMAN, JOAN M · 2013 to 2022
$2.1M
DeltaVision OMX Blaze 3D Structured Illumination MicroscopeS10OD021490 · OD · UNIVERSITY OF WASHINGTON · PI WORDEMAN, LINDA · 2017 to 2017
$779k
Functional diversity of zinc finger antiviral protein isoforms during viral infectionR21AI135437 · NIAID · UNIVERSITY OF WASHINGTON · PI SAVAN, RAM · 2018 to 2019
$484k
Consequences of IFIT Gene Evolution on Species-Specific Antiviral ImmunityK22AI119017 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DAUGHERTY, MATTHEW · 2016 to 2017
$267k
NIAID NIH HHS K22 AI119017NIAID NIH HHS R01 AI104002NIAID NIH HHS R01 AI108765NIAID NIH HHS R01 AI118916NIAID NIH HHS R01 AI127463NIAID NIH HHS R21 AI135437NIAID NIH HHS T32 AI106677NIGMS NIH HHS R01 GM069429NIGMS NIH HHS R35 GM133633NIGMS NIH HHS T32 GM007240NIGMS NIH HHS T32 GM007270NIH HHS S10 OD021490
6 · The paper itself

Abstract

The initial response to viral infection is anticipatory, with host antiviral restriction factors and pathogen sensors constantly surveying the cell to rapidly mount an antiviral response through the synthesis and downstream activity of interferons. After pathogen clearance, the host's ability to resolve this antiviral response and return to homeostasis is critical. Here, we found that isoforms of the RNA-binding protein ZAP functioned as both a direct antiviral restriction factor and an interferon-resolution factor. The short isoform of ZAP bound to and mediated the degradation of several host interferon messenger RNAs, and thus acted as a negative feedback regulator of the interferon response. In contrast, the long isoform of ZAP had antiviral functions and did not regulate interferon. The two isoforms contained identical RNA-targeting domains, but differences in their intracellular localization modulated specificity for host versus viral RNA, which resulted in disparate effects on viral replication during the innate immune response.

Indexed as

Alphavirus InfectionsFeedback, PhysiologicalHEK293 CellsHep G2 CellsHomeostasisHumansImmunity, InnateInterferon Regulatory Factor-3InterferonsProtein BindingProtein IsoformsRepressor ProteinsRNARNA-Binding ProteinsRNA, Small InterferingSindbis VirusInterferon Regulatory Factor-3InterferonsIRF3 protein, humanProtein IsoformsRepressor ProteinsRNARNA-Binding ProteinsRNA, Small InterferingYLPM1 protein, human

Identifiers

PMID31740798
PMCPMC7240801
OpenAlexW2986794069

What Socratic holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.