Evidence map›Paper›PMID 31769503›Full record

ReviewFEBS letters2019

Epigenetics and the dynamics of chromatin during adenovirus infections.

Kelsey L Lynch, Linda R Gooding, Charlie Garnett-Benson, David A Ornelles, Daphne C Avgousti

Open access · greenAbstract readReview
In one paragraph

Review in FEBS letters, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 39 citations in OpenAlex.

  1. Review
  2. Article
  3. Detection of AdenoviralInternational journal of molecular sciences · 2026
    Article
  4. Article
  5. Review
  6. Article
  7. Mysteries of adenovirus packaging.Journal of virology · 2025
    Review
  8. Article
  9. Review
  10. Review
  11. Article
  12. Review
  13. Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Fragment Size-Based Enrichment of Viral Sequences in Plasma Cell-Free DNA.The Journal of molecular diagnostics : JMD · 2022
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Kelsey L LynchHuman Biology Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.ORCID 0000-0002-6759-3969
Linda R GoodingDepartment of Microbiology and Immunology, Emory University School of Medicine, Atlanta, GA, USA.
Charlie Garnett-BensonDepartment of Biology, Georgia State University, Atlanta, GA, USA.
David A OrnellesDepartment of Microbiology and Immunology, Wake Forest School of Medicine, Winston-Salem, NC, USA.
Daphne C AvgoustiHuman Biology Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.ORCID 0000-0002-1700-3959
Fred Hutch Cancer Center · USEmory University · USGeorgia State University · USWake Forest University · US

Funding

Chromosome Metabolism and Cancer Training GrantT32CA009657 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI EISENMAN, ROBERT NEIL · 1991 to 2020
$7.6M
Investigating chromatin mechanisms using viral systemsR35GM133441 · NIGMS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI Daphne Christina Avgousti · 2019 to 2026
$3.8M
Prenatal adenovirus infection, inhibition of DNA repair, and childhood leukemiaR01CA127621 · NCI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI ORNELLES, DAVID ARNOLD · 2009 to 2013
$2.1M
Taming of T-regulatory Cells Following Tumor IrradiationR21CA162235 · NCI · GEORGIA STATE UNIVERSITY · PI BENSON, CHARLESE GARNETT · 2012 to 2013
$342k
Fred Hutchinson Cancer Research CenterNCI NIH HHS R01 CA127621NCI NIH HHS R21 CA162235NCI NIH HHS T32 CA009657NIGMS NIH HHS R35 GM133441
6 · The paper itself

Abstract

The DNA genome of eukaryotic cells is compacted by histone proteins within the nucleus to form chromatin. Nuclear-replicating viruses such as adenovirus have evolved mechanisms of chromatin manipulation to promote infection and subvert host defenses. Epigenetic factors may also regulate persistent adenovirus infection and reactivation in lymphoid tissues. In this review, we discuss the viral proteins E1A and protein VII that interact with and alter host chromatin, as well as E4orf3, which separates host chromatin from sites of viral replication. We also highlight recent advances in chromatin technologies that offer new insights into virus-directed chromatin manipulation. Beyond the role of chromatin in the viral replication cycle, we discuss the nature of persistent viral genomes in lymphoid tissue and cell lines, and the potential contribution of epigenetic signals in maintaining adenovirus in a quiescent state. By understanding the mechanisms through which adenovirus manipulates host chromatin, we will understand new aspects of this ubiquitous virus and shed light on previously unknown aspects of chromatin biology.

Indexed as

Epigenesis, GeneticAdenovirus E1A ProteinsAdenovirus E4 ProteinsAdenoviruses, HumanAdenovirus Infections, HumanCapsid ProteinsCell NucleusChromatinHost-Pathogen InteractionsHumansVirus ReplicationAdenovirus E1A ProteinsAdenovirus E4 ProteinsCapsid ProteinsChromatinE4orf3 protein, adenovirusadenoviruschromatinE1Aepigeneticshistoneshost-pathogen interactionspersistencepost-translational modificationsprotein VII

Identifiers

PMID31769503
PMCPMC6938402
OpenAlexW2990270534

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.