Evidence map›Paper›PMID 31844486›Full record

ArticleProceedings. IEEE International Symposium on Biomedical Imaging2019

DIAGNOSIS STATUS GUIDED BRAIN IMAGING GENETICS VIA INTEGRATED REGRESSION AND SPARSE CANONICAL CORRELATION ANALYSIS.

Lei Du, Kefei Liu, Xiaohui Yao, Shannon L Risacher, Lei Guo, Andrew J Saykin, Li Shen, ADNI

Abstract read
In one paragraph

Article in Proceedings. IEEE International Symposium on Biomedical Imaging, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Brain Imaging Genomics: Integrated Analysis and Machine Learning.Proceedings of the IEEE. Institute of Electrical and Electronics Engineers · 2020
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Lei DuSchool of Automation, Northwestern Polytechnical University, Xi'an, China.
Kefei LiuUniversity of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Xiaohui YaoUniversity of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Shannon L RisacherIndiana University School of Medicine, Indianapolis, IN, USA.
Lei GuoSchool of Automation, Northwestern Polytechnical University, Xi'an, China.
Andrew J SaykinIndiana University School of Medicine, Indianapolis, IN, USA.
Li ShenUniversity of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
ADNI

Funding

Alzheimer's Disease Neuroimaging Initiative - SupplementU01AG024904 · NIA · NORTHERN CALIFORNIA INSTITUTE RES &EDUC · PI WEINER, MICHAEL W · 2004 to 2015
$121.0M
Research Education ComponentP30AG010133 · NIA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI SAYKIN, ANDREW J · 1991 to 2020
$37.3M
Memory Circuitry in MCI and Early Alzheimer’s Disease Prodrome: Molecular DriversR01AG019771 · NIA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI SAYKIN, ANDREW J · 2001 to 2021
$6.9M
Metabolic Networks and Pathways in Alzheimer's DiseaseR01AG046171 · NIA · DUKE UNIVERSITY · PI KADDURAH-DAOUK, RIMA F · 2014 to 2017
$4.4M
Genetic architecture of memory and executive functioning in Alzheimer's diseaseR01AG042437 · NIA · UNIVERSITY OF WASHINGTON · PI CRANE, PAUL K · 2014 to 2017
$2.7M
Integrative Bioinformatics Approaches to Human Brain Genomics and ConnectomicsR01EB022574 · NIBIB · UNIVERSITY OF PENNSYLVANIA · PI SHEN, LI · 2016 to 2019
$1.9M
Bioinformatics Strategies for Multidimensional Brain Imaging GeneticsR01LM011360 · NLM · INDIANA UNIVERSITY INDIANAPOLIS · PI MOORE, JASON H., SAYKIN, ANDREW J · 2012 to 2015
$1.4M
Imaging and genetic biomarkers for Alzheimer's diseaseR01AG040770 · NIA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI APOSTOLOVA, LIANA G · 2012 to 2016
$1.4M
NIA NIH HHS P30 AG010133NIA NIH HHS R01 AG019771NIA NIH HHS R01 AG040770NIA NIH HHS R01 AG042437NIA NIH HHS R01 AG046171NIA NIH HHS U01 AG024904NIBIB NIH HHS R01 EB022574NLM NIH HHS R01 LM011360
6 · The paper itself

Abstract

Brain imaging genetics use the imaging quantitative traits (QTs) as intermediate endophenotypes to identify the genetic basis of the brain structure, function and abnormality. The regression and canonical correlation analysis (CCA) coupled with sparsity regularization are widely used in imaging genetics. The regression only selects relevant features for predictors. SCCA overcomes this but is unsupervised and thus could not make use of the diagnosis information. We propose a novel method integrating regression and SCCA together to construct a supervised sparse bi-multivariate learning model. The regression part plays a role of providing guidance for imaging QTs selection, and the SCCA part is focused on selecting relevant genetic markers and imaging QTs. We propose an efficient algorithm based on the alternative search method. Our method obtains better feature selection results than both regression and SCCA on both synthetic and real neuroimaging data. This demonstrates that our method is a promising bi-multivariate tool for brain imaging genetics.

Indexed as

Brain imaging geneticsLassosparse canonical correlation analysissparse learning

Identifiers

PMID31844486
PMCPMC6914314

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.