Evidence map›Paper›PMID 31847191›Full record

ReviewMicroorganisms2019

Coherent Domains of Transcription Coordinate Gene Expression During Bacterial Growth and Adaptation.

Georgi Muskhelishvili, Raphaël Forquet, Sylvie Reverchon, Sam Meyer, William Nasser

Abstract readReview
In one paragraph

Review in Microorganisms, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Article
  6. Review
  7. Article
  8. The highly conserved chromosomal periodicity of transcriptomes and the correlation of its amplitude with the growth rate in Escherichia coli.DNA research : an international journal for rapid publication of reports on genes and genomes · 2020
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Georgi MuskhelishviliAgricultural University of Georgia, 0159 Tbilisi, Georgia.
Raphaël ForquetINSA-Lyon, CNRS, UMR5240, Microbiologie, Adaptation, Pathogénie, Univ. Lyon, Université Lyon 1, F-69622 Villeurbanne, France.
Sylvie ReverchonINSA-Lyon, CNRS, UMR5240, Microbiologie, Adaptation, Pathogénie, Univ. Lyon, Université Lyon 1, F-69622 Villeurbanne, France.ORCID 0000-0002-0478-3474
Sam MeyerINSA-Lyon, CNRS, UMR5240, Microbiologie, Adaptation, Pathogénie, Univ. Lyon, Université Lyon 1, F-69622 Villeurbanne, France.
William NasserINSA-Lyon, CNRS, UMR5240, Microbiologie, Adaptation, Pathogénie, Univ. Lyon, Université Lyon 1, F-69622 Villeurbanne, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recent studies strongly suggest that in bacteria, both the genomic pattern of DNA thermodynamic stability and the order of genes along the chromosomal origin-to-terminus axis are highly conserved and that this spatial organization plays a crucial role in coordinating genomic transcription. In this article, we explore the relationship between genomic sequence organization and transcription in the commensal bacterium

Indexed as

bacteriachromosomal domainschromosomal origin-to-terminus axisDNA supercoilingDNA thermodynamic stabilitygenetic regulationnucleoid-associated proteinstranscription

Identifiers

PMID31847191
PMCPMC6956064

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.