Evidence map›Paper›PMID 31882984›Full record

ArticleScientific reports2019

Multi-Factor Regulation of the Master Modulator LeuO for the Cyclic-(Phe-Pro) Signaling Pathway in Vibrio vulnificus.

Na-Young Park, In Hwang Kim, Yancheng Wen, Keun-Woo Lee, Sora Lee, Jeong-A Kim, Kwang-Hwan Jung, Kyu-Ho Lee, Kun-Soo Kim

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Na-Young ParkDepartment of Life Science, Sogang University, Seoul, Korea.
In Hwang KimDepartment of Life Science, Sogang University, Seoul, Korea.
Yancheng WenDepartment of Life Science, Sogang University, Seoul, Korea.
Keun-Woo LeeDepartment of Life Science, Sogang University, Seoul, Korea.
Sora LeeDepartment of Life Science, Sogang University, Seoul, Korea.
Jeong-A KimDepartment of Life Science, Sogang University, Seoul, Korea.
Kwang-Hwan JungDepartment of Life Science, Sogang University, Seoul, Korea.
Kyu-Ho LeeDepartment of Life Science, Sogang University, Seoul, Korea.
Kun-Soo KimDepartment of Life Science, Sogang University, Seoul, Korea. kskim@sogang.ac.kr.
Sogang University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

LeuO plays the role of a master regulator in the cyclic-L-phenylalanine-L-proline (cFP)-dependent signaling pathway in Vibrio vulnificus. cFP, as shown through isothermal titration calorimetry analysis, binds specifically to the periplasmic domain of ToxR. Binding of cFP triggers a change in the cytoplasmic domain of ToxR, which then activates transcription of leuO encoding a LysR-type regulator. LeuO binds to the region upstream of its own coding sequence, inhibiting its own transcription and maintaining a controlled level of expression. A five-bp deletion in this region abolished expression of LeuO, but a ten-bp deletion did not, suggesting that a DNA bending mechanism is involved in the regulation. Furthermore, binding of RNA polymerase was significantly lower both in the deletion of the ToxR binding site and in the five-bp deletion, but not in the ten-bp deletion, as shown in pull-down assays using an antibody against RNA polymerase subunit α. In summary, multiple factors are involved in control of the expression of LeuO, a master regulator that orchestrates downstream regulators to modulate factors required for survival and pathogenicity of the pathogen.

Indexed as

Signal TransductionBacterial ProteinsDNA-Binding ProteinsGene Expression Regulation, BacterialModels, BiologicalPeptides, CyclicProtein BindingProtein Interaction Domains and MotifsRegulatory Sequences, Nucleic AcidTranscription FactorsVibrio vulnificusBacterial ProteinsDNA-Binding ProteinsPeptides, CyclictoxR protein, bacteriaTranscription Factors

Identifiers

PMID31882984
PMCPMC6934829
OpenAlexW2996962136

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.