Evidence map›Paper›PMID 31885201›Full record

ArticleMolecular systems biology2019

A solid-phase transfection platform for arrayed CRISPR screens.

Özdemirhan Serçin, Sabine Reither, Paris Roidos, Nadja Ballin, Spyridon Palikyras, Anna Baginska, Katrin Rein, Maria Llamazares, Aliaksandr Halavatyi, Hauke Winter and 6 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Molecular systems biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 1 country.

Özdemirhan SerçinBioMed X Innovation Center, Heidelberg, Germany.ORCID 0000-0002-4893-9135
Sabine ReitherAdvanced Light Microscopy Facility, European Molecular Biology Laboratory, Heidelberg, Germany.
Paris RoidosBioMed X Innovation Center, Heidelberg, Germany.ORCID 0000-0002-6896-8443
Nadja BallinBioMed X Innovation Center, Heidelberg, Germany.ORCID 0000-0002-8362-1050
Spyridon PalikyrasBioMed X Innovation Center, Heidelberg, Germany.
Anna BaginskaBioMed X Innovation Center, Heidelberg, Germany.
Katrin ReinBioMed X Innovation Center, Heidelberg, Germany.
Maria LlamazaresBioMed X Innovation Center, Heidelberg, Germany.ORCID 0000-0001-6559-9374
Aliaksandr HalavatyiAdvanced Light Microscopy Facility, European Molecular Biology Laboratory, Heidelberg, Germany.
Hauke WinterDepartment of Surgery, Thoraxklinik at University Hospital Heidelberg, Heidelberg, Germany.
Thomas MuleyTranslational Lung Research Center (TLRC) Heidelberg, Member of the German Center for Lung Research (DZL), Heidelberg, Germany.
Renata Z JurkowskaBioMed X Innovation Center, Heidelberg, Germany.ORCID 0000-0002-4507-2222
Amir AbdollahiDivision of Molecular and Translational Radiation Oncology, National Center for Tumor Diseases (NCT), and German Cancer Research Center (DKFZ), Heidelberg University Hospital, Heidelberg, Germany.ORCID 0000-0002-8016-5897
Frank T ZenkeTranslational Innovation Platform Oncology, Merck KGaA, Darmstadt, Germany.
Beate NeumannAdvanced Light Microscopy Facility, European Molecular Biology Laboratory, Heidelberg, Germany.
Balca R MardinBioMed X Innovation Center, Heidelberg, Germany.ORCID 0000-0002-0716-3545
BioMed X Institute · DEEuropean Molecular Biology Laboratory · DEHeidelberg University · DEGerman Cancer Research Center · DEMerck (Germany) · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Arrayed CRISPR-based screens emerge as a powerful alternative to pooled screens making it possible to investigate a wide range of cellular phenotypes that are typically not amenable to pooled screens. Here, we describe a solid-phase transfection platform that enables CRISPR-based genetic screens in arrayed format with flexible readouts. We demonstrate efficient gene knockout upon delivery of guide RNAs and Cas9/guide RNA ribonucleoprotein complexes into untransformed and cancer cell lines. In addition, we provide evidence that our platform can be easily adapted to high-throughput screens and we use this approach to study oncogene addiction in tumor cells. Finally demonstrating that the human primary cells can also be edited using this method, we pave the way for rapid testing of potential targeted therapies.

Indexed as

Cell Line, TumorCRISPR-Cas SystemsGene EditingGenetic Predisposition to DiseaseHigh-Throughput Screening AssaysHumansNeoplasmsPhenotypeRNA, Guide, CRISPR-Cas SystemsTransfectionRNA, Guide, CRISPR-Cas Systemsarrayed screensCRISPR/Cas9gRNA/RNP deliverysolid phasetransfection platform

Identifiers

PMID31885201
PMCPMC6926425
OpenAlexW2996210067

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.