Evidence map›Paper›PMID 31923286›Full record

ArticlePLoS pathogens2020

Epigenetic factor siRNA screen during primary KSHV infection identifies novel host restriction factors for the lytic cycle of KSHV.

Nenavath Gopal Naik, Thomas Hong Nguyen, Lauren Roberts, Luke Todd Fischer, Katherine Glickman, Gavin Golas, Bernadett Papp, Zsolt Toth

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.8field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Molecular Mechanisms of KSHV Latency Establishment and Maintenance.Current clinical microbiology reports · 2024
    Article
  6. Review
  7. Article
  8. Article
  9. Insight into the Epigenetics of Kaposi's Sarcoma-Associated Herpesvirus.International journal of molecular sciences · 2023
    Review
  10. RNF213 modulates γ-herpesvirus infection and reactivation via targeting the viral Replication and Transcription Activator.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. KDM2B Overexpression Facilitates LyticJournal of virology · 2021
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Nenavath Gopal NaikDepartment of Oral Biology, University of Florida College of Dentistry, 1395 Center Drive, Gainesville, FL, United States of America.
Thomas Hong NguyenDepartment of Oral Biology, University of Florida College of Dentistry, 1395 Center Drive, Gainesville, FL, United States of America.
Lauren RobertsDepartment of Oral Biology, University of Florida College of Dentistry, 1395 Center Drive, Gainesville, FL, United States of America.ORCID 0000-0002-5751-0891
Luke Todd FischerDepartment of Oral Biology, University of Florida College of Dentistry, 1395 Center Drive, Gainesville, FL, United States of America.ORCID 0000-0002-9926-1977
Katherine GlickmanDepartment of Oral Biology, University of Florida College of Dentistry, 1395 Center Drive, Gainesville, FL, United States of America.
Gavin GolasDepartment of Oral Biology, University of Florida College of Dentistry, 1395 Center Drive, Gainesville, FL, United States of America.
Bernadett PappDepartment of Oral Biology, University of Florida College of Dentistry, 1395 Center Drive, Gainesville, FL, United States of America.
Zsolt TothDepartment of Oral Biology, University of Florida College of Dentistry, 1395 Center Drive, Gainesville, FL, United States of America.ORCID 0000-0001-6628-3945
University of Florida · USUniversity of Florida Health · US

Funding

Comprehensive Training Program in Oral BiologyT90DE021990 · NIDCR · UNIVERSITY OF FLORIDA · PI Jose A Lemos · 2011 to 2026
$8.2M
Viral and host strategies for regulation of KSHV infectionR01AI132554 · NIAID · UNIVERSITY OF FLORIDA · PI TOTH, ZSOLT · 2018 to 2022
$1.9M
Genomic characterization of Forkhead factors in oral infectionR03DE028029 · NIDCR · UNIVERSITY OF FLORIDA · PI PAPP, BERNADETT · 2018 to 2019
$305k
Regulation of KSHV lytic replication in oral epithelial cellsR03DE025562 · NIDCR · UNIVERSITY OF SOUTHERN CALIFORNIA · PI TOTH, ZSOLT · 2015 to 2016
$236k
NIAID NIH HHS R01 AI132554NIDCR NIH HHS R03 DE025562NIDCR NIH HHS R03 DE028029NIDCR NIH HHS T90 DE021990
6 · The paper itself

Abstract

Establishment of viral latency is not only essential for lifelong Kaposi's sarcoma-associated herpesvirus (KSHV) infection, but it is also a prerequisite of viral tumorigenesis. The latent viral DNA has a complex chromatin structure, which is established in a stepwise manner regulated by host epigenetic factors during de novo infection. However, despite the importance of viral latency in KSHV pathogenesis, we still have limited information about the repertoire of epigenetic factors that are critical for the establishment and maintenance of KSHV latency. Therefore, the goal of this study was to identify host epigenetic factors that suppress lytic KSHV genes during primary viral infection, which would indicate their role in latency establishment. We performed an siRNA screen targeting 392 host epigenetic factors during primary infection and analyzed which ones affect the expression of the viral replication and transcription activator (RTA) and/or the latency-associated nuclear antigen (LANA), which are viral genes essential for lytic replication and latency, respectively. As a result, we identified the Nucleosome Remodeling and Deacetylase (NuRD) complex, Tip60 and Tip60-associated co-repressors, and the histone demethylase KDM2B as repressors of KSHV lytic genes during both de novo infection and the maintenance of viral latency. Furthermore, we showed that KDM2B rapidly binds to the incoming viral DNA as early as 8 hpi, and can limit the enrichment of activating histone marks on the RTA promoter favoring the downregulation of RTA expression even prior to the polycomb proteins-regulated heterochromatin establishment on the viral genome. Strikingly, KDM2B can also suppress viral gene expression and replication during lytic infection of primary gingival epithelial cells, revealing that KDM2B can act as a host restriction factor of the lytic cycle of KSHV during both latent and lytic infections in multiple different cell types.

Indexed as

Antigens, ViralEpigenesis, GeneticF-Box ProteinsGene Expression Regulation, ViralHerpesviridae InfectionsHerpesvirus 8, HumanHumansImmediate-Early ProteinsJumonji Domain-Containing Histone DemethylasesLysine Acetyltransferase 5Nuclear ProteinsRNA, Small InterferingTrans-ActivatorsVirus LatencyAntigens, ViralF-Box ProteinsImmediate-Early ProteinsJumonji Domain-Containing Histone DemethylasesKAT5 protein, humanKDM2A protein, humanlatency-associated nuclear antigenLysine Acetyltransferase 5Nuclear ProteinsRNA, Small InterferingRta protein, Human herpesvirus 8Trans-Activators

Identifiers

PMID31923286
PMCPMC6977772
OpenAlexW3000143933

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.