Evidence map›Paper›PMID 31944151›Full record

ArticleCell cycle (Georgetown, Tex.)2020

Phosphatase POPX2 interferes with cell cycle by interacting with Chk1.

Pu Rum Kim, Yen Ling Koon, Raphael Tze Chuen Lee, Farouq Azizan, Dylan Hong Zheng Koh, Keng-Hwee Chiam, Cheng-Gee Koh

Open access · bronzeAbstract read
In one paragraph

Article in Cell cycle (Georgetown, Tex.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 48% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Pu Rum KimSchool of Biological Sciences, Nanyang Technological University, Singapore, Singapore.
Yen Ling KoonInterdisciplinary Graduate School, Nanyang Technological University, Singapore, Singapore.
Raphael Tze Chuen LeeASTAR, Biopolis, Bioinformatics Institute, Singapore, Singapore.ORCID 0000-0001-5634-9154
Farouq AzizanSchool of Biological Sciences, Nanyang Technological University, Singapore, Singapore.ORCID 0000-0002-9350-0981
Dylan Hong Zheng KohSchool of Biological Sciences, Nanyang Technological University, Singapore, Singapore.ORCID 0000-0002-5252-6309
Keng-Hwee ChiamASTAR, Biopolis, Bioinformatics Institute, Singapore, Singapore.
Cheng-Gee KohSchool of Biological Sciences, Nanyang Technological University, Singapore, Singapore.
Nanyang Technological University · SGAgency for Science, Technology and Research · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Protein-protein interaction network analysis plays critical roles in predicting the functions of target proteins. In this study, we used a combination of SILAC-MS proteomics and bioinformatic approaches to identify Checkpoint Kinase 1 (Chk1) as a possible POPX2 phosphatase interacting protein. POPX2 is a PP2C phosphatase that has been implicated in cancer cell invasion and migration. From the Domain-Domain Interaction (DDI) database, we first determined that the PP2C phosphatase domain interacts with Pkinase domain. Subsequently, 46 proteins with Pkinase domain were identified from POPX2 SILAC-MS data. We then narrowed down the leads and confirmed the biological interaction between Chk1 and POPX2. We also found that Chk1 is a substrate of POPX2. Chk1 is a key regulator of the cell cycle and is activated when the cell suffers DNA damage. Our approach has led us to identify POPX2 as a regulator of Chk1 and can interfere with the normal function of Chk1 at G1-S transition of the cell cycle in response to DNA damage.

Indexed as

Cell CycleAmino Acid SequenceCell LineCheckpoint Kinase 1DNA DamageGene SilencingHumansModels, BiologicalPhosphoprotein PhosphatasesPhosphorylationPhylogenyProtein BindingProtein DomainsProtein Interaction MappingReproducibility of ResultsStructural Homology, ProteinCheckpoint Kinase 1Phosphoprotein PhosphatasesPPM1F protein, humanChk1 kinaseDNA damage pathwayG1-S checkpointPOPX2 phosphataseProtein–Protein Interactions

Identifiers

PMID31944151
PMCPMC7100883
OpenAlexW2999309403

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.