Evidence map›Paper›PMID 32042197›Full record

ArticleNature chemical biology2020

Human PLD structures enable drug design and characterization of isoenzyme selectivity.

Claire M Metrick, Emily A Peterson, Joseph C Santoro, Istvan J Enyedy, Paramasivam Murugan, TeYu Chen, Klaus Michelsen, Michael Cullivan, Kerri A Spilker, P Rajesh Kumar and 2 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature chemical biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 38 citations in OpenAlex.

  1. Phospholipases D: An Update on Structure-Function Relationships.Methods in molecular biology (Clifton, N.J.) · 2027
    Review
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  12. A New Phospholipase D fromInternational journal of molecular sciences · 2022
    Article
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  15. Article
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  17. Article
  18. Crystal Structure of a Phospholipase D from the Plant-Associated BacteriaInternational journal of molecular sciences · 2021
    Article
  19. Structure and regulation of human phospholipase D.Advances in biological regulation · 2021
    Review
  20. Illustrating human PLD.Nature chemical biology · 2020
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Claire M MetrickPhysical Biochemistry, Biotherapeutic and Medicinal Sciences, Biogen, Cambridge, MA, USA.ORCID http://orcid.org/0000-0001-8660-5665
Emily A PetersonMedicinal Chemistry, Biotherapeutic and Medicinal Sciences, Biogen, Cambridge, MA, USA.
Joseph C SantoroBioassays and High Throughput Screens, Biotherapeutic and Medicinal Sciences, Biogen, Cambridge, MA, USA.
Istvan J EnyedyMedicinal Chemistry, Biotherapeutic and Medicinal Sciences, Biogen, Cambridge, MA, USA.
Paramasivam MuruganBioassays and High Throughput Screens, Biotherapeutic and Medicinal Sciences, Biogen, Cambridge, MA, USA.
TeYu ChenMedicinal Chemistry, Biotherapeutic and Medicinal Sciences, Biogen, Cambridge, MA, USA.
Klaus MichelsenPhysical Biochemistry, Biotherapeutic and Medicinal Sciences, Biogen, Cambridge, MA, USA.
Michael CullivanPhysical Biochemistry, Biotherapeutic and Medicinal Sciences, Biogen, Cambridge, MA, USA.
Kerri A SpilkerPhysical Biochemistry, Biotherapeutic and Medicinal Sciences, Biogen, Cambridge, MA, USA.
P Rajesh KumarPhysical Biochemistry, Biotherapeutic and Medicinal Sciences, Biogen, Cambridge, MA, USA.
Tricia L May-DrackaMedicinal Chemistry, Biotherapeutic and Medicinal Sciences, Biogen, Cambridge, MA, USA.
Jayanth V ChodaparambilPhysical Biochemistry, Biotherapeutic and Medicinal Sciences, Biogen, Cambridge, MA, USA. jay.chodaparambil@biogen.com.ORCID http://orcid.org/0000-0002-4217-8355
Biogen (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phospholipase D enzymes (PLDs) are ubiquitous phosphodiesterases that produce phosphatidic acid (PA), a key second messenger and biosynthetic building block. Although an orthologous bacterial Streptomyces sp. strain PMF PLD structure was solved two decades ago, the molecular basis underlying the functions of the human PLD enzymes (hPLD) remained unclear based on this structure due to the low homology between these sequences. Here, we describe the first crystal structures of hPLD1 and hPLD2 catalytic domains and identify novel structural elements and functional differences between the prokaryotic and eukaryotic enzymes. Furthermore, structure-based mutation studies and structures of inhibitor-hPLD complexes allowed us to elucidate the binding modes of dual and isoform-selective inhibitors, highlight key determinants of isoenzyme selectivity and provide a basis for further structure-based drug discovery and functional characterization of this therapeutically important superfamily of enzymes.

Indexed as

Amino Acid SequenceCatalytic DomainDrug DesignHumansIsoenzymesPhospholipase DPhosphoric Diester HydrolasesStructure-Activity RelationshipIsoenzymesPhospholipase Dphospholipase D1phospholipase D2Phosphoric Diester Hydrolases

Identifiers

PMID32042197
OpenAlexW3005190670

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.