Evidence map›Paper›PMID 32142182›Full record

ArticleProtein science : a publication of the Protein Society2020

Mechanisms of negative membrane curvature sensing and generation by ESCRT III subunit Snf7.

Binod Nepal, Aliasghar Sepehri, Themis Lazaridis

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Review
  6. Article
  7. Mechanisms of negative membrane curvature sensing and generation by ESCRT III subunit Snf7.Protein science : a publication of the Protein Society · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Binod NepalDepartment of Chemistry, City College of New York, New York, New York, USA.
Aliasghar SepehriDepartment of Chemistry, City College of New York, New York, New York, USA.
Themis LazaridisDepartment of Chemistry, City College of New York, New York, New York, USA.ORCID 0000-0003-4218-7590

Funding

Cellular/Molecular Basis of Development: Research CenterG12MD007603 · NIMHD · CITY COLLEGE OF NEW YORK · PI PEZZANO, MARK · 2012 to 2017
$11.5M
Mechanism of membrane pore formation by antimicrobial peptidesR01GM117146 · NIGMS · CITY COLLEGE OF NEW YORK · PI LAZARIDIS, THEMIS · 2016 to 2019
$1.2M
NIGMS NIH HHS GM117146NIGMS NIH HHS R01 GM117146NIH HHS 8G12MD007603NIMHD NIH HHS G12 MD007603
6 · The paper itself

Abstract

Certain proteins have the propensity to bind to negatively curved membranes and generate negative membrane curvature. The mechanism of action of these proteins is much less studied and understood than those that sense and generate positive curvature. In this work, we use implicit membrane modeling to explore the mechanism of an important negative curvature sensing and generating protein: the main ESCRT III subunit Snf7. We find that Snf7 monomers alone can sense negative curvature and that curvature sensitivity increases for dimers and trimers. We have observed spontaneous bending of Snf7 oligomers into circular structures with preferred radius of ~20 nm. The preferred curvature of Snf7 filaments is further confirmed by the simulations of preformed spirals on a cylindrical membrane surface. Snf7 filaments cannot bind with the same interface to flat and curved membranes. We find that even when a filament has the preferred radius, it is always less stable on the flat membrane surface than on the interior cylindrical membrane surface. This provides an additional energy for membrane bending which has not been considered in the spiral spring model. Furthermore, the rings on the cylindrical spirals are bridged together by helix 4 and hence are extra stabilized compared to the spirals on the flat membrane surface.

Indexed as

Endosomal Sorting Complexes Required for TransportHumansMolecular Dynamics SimulationProtein ConformationProtein SubunitsStatic ElectricityCHMP4A protein, humanEndosomal Sorting Complexes Required for TransportProtein Subunitscomputer simulationESCRT IIIlipid bilayermembrane curvature sensing and generationSnf7

Identifiers

PMID32142182
PMCPMC7255513

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.