Evidence map›Paper›PMID 32151278›Full record

ArticleEpigenetics & chromatin2020

Bromodomain and extra-terminal domain (BET) proteins regulate melanocyte differentiation.

Archit Trivedi, Aanchal Mehrotra, Caitlin E Baum, Brandon Lewis, Tupa Basuroy, Thomas Blomquist, Robert Trumbly, Fabian V Filipp, Vijayasaradhi Setaluri, Ivana L de la Serna

Open access · goldAbstract read
In one paragraph

Article in Epigenetics & chromatin, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 21 citations in OpenAlex.

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  13. Zebrafish ParalogsJournal of developmental biology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Archit TrivediDepartment of Cancer Biology, University of Toledo College of Medicine and Life Sciences, 3035 Arlington Ave, Toledo, OH, 43614, USA.
Aanchal MehrotraDepartment of Cancer Biology, University of Toledo College of Medicine and Life Sciences, 3035 Arlington Ave, Toledo, OH, 43614, USA.
Caitlin E BaumDepartment of Pathology, University of Toledo College of Medicine and Life Sciences, 3035 Arlington Ave, Toledo, OH, 43614, USA.
Brandon LewisDepartment of Cancer Biology, University of Toledo College of Medicine and Life Sciences, 3035 Arlington Ave, Toledo, OH, 43614, USA.
Tupa BasuroyDepartment of Cancer Biology, University of Toledo College of Medicine and Life Sciences, 3035 Arlington Ave, Toledo, OH, 43614, USA.
Thomas BlomquistDepartment of Pathology, University of Toledo College of Medicine and Life Sciences, 3035 Arlington Ave, Toledo, OH, 43614, USA.
Robert TrumblyDepartment of Cancer Biology, University of Toledo College of Medicine and Life Sciences, 3035 Arlington Ave, Toledo, OH, 43614, USA.
Fabian V FilippCancer Systems Biology, Institute of Computational Biology, Helmholtz Zentrum München, Ingolstädter Landstraße 1, München, 85764, Germany.ORCID 0000-0001-9889-5727
Vijayasaradhi SetaluriDepartment of Dermatology, University of Wisconsin-Madison, The School of Medicine and Public Health, 1 S. Park Street, Madison, WI, 53715, USA.
Ivana L de la SernaDepartment of Cancer Biology, University of Toledo College of Medicine and Life Sciences, 3035 Arlington Ave, Toledo, OH, 43614, USA. ivana.delaserna@utoledo.edu.ORCID 0000-0002-6429-287X
University of Toledo · USHelmholtz Zentrum München · DEMassachusetts General Hospital · USSeattle Pacific University · USUniversity of Wisconsin–Madison · US

Funding

Regulation of Melanocyte Differentiation by SWI/SNF Chromatin Remodeling EnzymesR01AR059379 · NIAMS · UNIVERSITY OF TOLEDO HEALTH SCI CAMPUS · PI DE LA SERNA, IVANA L · 2010 to 2014
$1.6M
Tumor pyruvate kinase as key regulator of cancer metabolismR00CA154887 · NCI · UNIVERSITY OF CALIFORNIA, MERCED · PI FILIPP, FABIAN VOLKER · 2012 to 2014
$725k
NCI NIH HHS R00 CA154887NIAMS NIH HHS R01 AR059379NIAMS NIH HHS R01AR059379
6 · The paper itself

Abstract

backgroundPharmacologic inhibition of bromodomain and extra-terminal (BET) proteins is currently being explored as a new therapeutic approach in cancer. Some studies have also implicated BET proteins as regulators of cell identity and differentiation through their interactions with lineage-specific factors. However, the role of BET proteins has not yet been investigated in melanocyte differentiation. Melanocyte inducing transcription factor (MITF) is the master regulator of melanocyte differentiation, essential for pigmentation and melanocyte survival. In this study, we tested the hypothesis that BET proteins regulate melanocyte differentiation through interactions with MITF.

resultsHere we show that chemical inhibition of BET proteins prevents differentiation of unpigmented melanoblasts into pigmented melanocytes and results in de-pigmentation of differentiated melanocytes. BET inhibition also slowed cell growth, without causing cell death, increasing the number of cells in G1. Transcriptional profiling revealed that BET inhibition resulted in decreased expression of pigment-specific genes, including many MITF targets. The expression of pigment-specific genes was also down-regulated in melanoma cells, but to a lesser extent. We found that RNAi depletion of the BET family members, bromodomain-containing protein 4 (BRD4) and bromodomain-containing protein 2 (BRD2) inhibited expression of two melanin synthesis enzymes, TYR and TYRP1. Both BRD4 and BRD2 were detected on melanocyte promoters surrounding MITF-binding sites, were associated with open chromatin structure, and promoted MITF binding to these sites. Furthermore, BRD4 and BRD2 physically interacted with MITF.

conclusionThese findings indicate a requirement for BET proteins in the regulation of pigmentation and melanocyte differentiation. We identified changes in pigmentation specific gene expression that occur upon BET inhibition in melanoblasts, melanocytes, and melanoma cells.

Indexed as

Cell DifferentiationBromodomain Containing ProteinsCell Cycle ProteinsCells, CulturedHEK293 CellsHumansMelaninsMelanocytesMembrane GlycoproteinsMicrophthalmia-Associated Transcription FactorMonophenol MonooxygenaseOxidoreductasesPromoter Regions, GeneticProtein BindingTranscription FactorsBRD2 protein, humanBRD4 protein, humanBromodomain Containing ProteinsCell Cycle ProteinsMelaninsMembrane GlycoproteinsMicrophthalmia-Associated Transcription FactorMITF protein, humanMonophenol MonooxygenaseOxidoreductasesTranscription FactorsTYRP1 protein, humanBETBRD4Bromodomain and extra-terminal domainChIP-SeqEpigenomicsJQ1Melanocyte differentiationMelanomaMITFPigmentationSystems biologyTranscriptional networks

Identifiers

PMID32151278
PMCPMC7063807
OpenAlexW3011326474

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.