Evidence map›Paper›PMID 32158188›Full record

ArticleDrug design, development and therapy2020

In silico Analysis, Molecular Docking, Molecular Dynamic, Cloning, Expression and Purification of Chimeric Protein in Colorectal Cancer Treatment.

Hassan Dana, Ghanbar Mahmoodi Chalbatani, Elahe Gharagouzloo, Seyed Rouhollah Miri, Fereidoon Memari, Reza Rasoolzadeh, Mohammad Reza Zinatizadeh, Peyman Kheirandish Zarandi, Vahid Marmari

Open access · goldAbstract read
In one paragraph

Article in Drug design, development and therapy, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 27 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Frontiers in immunology · 2025
    Article
  6. Variations of VEGFR2 Chemical Space: Stimulator and Inhibitory Peptides.International journal of molecular sciences · 2024
    Article
  7. Article
  8. Article
  9. Frontiers in chemistry · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Iranian journal of parasitology
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Hassan Dana *Cancer Research Center, Cancer Institute of Iran, Tehran University of Medical Science, Tehran, Iran.
Ghanbar Mahmoodi Chalbatani *Cancer Research Center, Cancer Institute of Iran, Tehran University of Medical Science, Tehran, Iran.
Elahe GharagouzlooCancer Research Center, Cancer Institute of Iran, Tehran University of Medical Science, Tehran, Iran.
Seyed Rouhollah MiriCancer Research Center, Cancer Institute of Iran, Tehran University of Medical Science, Tehran, Iran.
Fereidoon MemariCancer Research Center, Cancer Institute of Iran, Tehran University of Medical Science, Tehran, Iran.
Reza RasoolzadehDepartment of Biology, Science and Research Branch, Islamic Azad University, Tehran, Iran.
Mohammad Reza ZinatizadehDepartment of Biology, Science and Research Branch, Islamic Azad University, Tehran, Iran.
Peyman Kheirandish ZarandiDepartment of Biology, Science and Research Branch, Islamic Azad University, Tehran, Iran.
Vahid MarmariDepartment of Biology, Damghan Branch, Islamic Azad University, Damghan, Iran.
University of Tehran · IRIslamic Azad University, Science and Research Branch · IRIslamic Azad University, Damghan Branch · IR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionColorectal cancer (CRC) is a type of cancer in humans that leads to high mortality and morbidity. CD166 and CD326 are immunoglobulins that are associated with cell migration. These molecules are included in tumorigenesis of CRC and serve a great marker of CRC stem cells. In the present study, we devised a novel chimeric protein including the V

methodsIn silico techniques were launched to characterize the properties and structure of the protein. We have predicted physicochemical properties, structures, stability, MHC class I binding properties and ligand-receptor interaction of this chimeric protein by means of computational bioinformatics tools and servers. The sequence of chimeric gene was optimized for expression in prokaryotic host using online tools and cloned into pET-28a plasmid. The recombinant pET28a was transformed into the

resultsThe designed chimeric protein retained high stability and the same immunogenicity as of the original proteins. Bioinformatics data indicated that the epitopes of the synthetic chimeric protein might induce B-cell- and T-cell-mediated immune responses. Furthermore, a gene was synthesized using the codon bias of a prokaryotic expression system. This synthetic gene expressed a bacterial expression system. The recombinant protein with molecular weights of 27kDa was expressed and confirmed by anti-his Western blot analysis.

conclusionThe designed recombinant protein may be useful as a CRC diagnostic tool and for developing a protective vaccine against CRC.

Indexed as

Computer SimulationMolecular Docking SimulationMolecular Dynamics SimulationActivated-Leukocyte Cell Adhesion MoleculeAntigens, CDCell Adhesion Molecules, NeuronalCloning, MolecularColorectal NeoplasmsComputational BiologyEpithelial Cell Adhesion MoleculeFetal ProteinsHumansProtein EngineeringRecombinant ProteinsActivated-Leukocyte Cell Adhesion MoleculeALCAM protein, humanAntigens, CDCell Adhesion Molecules, NeuronalEpithelial Cell Adhesion MoleculeFetal ProteinsRecombinant Proteinschimeric proteinmolecular dockingmolecular dynamicvaccine

Identifiers

PMID32158188
PMCPMC6986173
OpenAlexW3001179882

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.