Evidence map›Paper›PMID 32214214›Full record

ArticleScientific reports2020

The transcriptome of the newt Cynops orientalis provides new insights into evolution and function of sexual gene networks in sarcopterygians.

Maria Assunta Biscotti, Federica Carducci, Marco Barucca, Marco Gerdol, Alberto Pallavicini, Manfred Schartl, Adriana Canapa, Mateus Contar Adolfi

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
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  5. Article
  6. Article
  7. Rebuilding limbs, one cell at a time.Developmental dynamics : an official publication of the American Association of Anatomists · 2022
    Article
  8. The vitellogenin genes in Cynops orientalis: New insights on the evolution of the vtg gene family in amphibians.Journal of experimental zoology. Part B, Molecular and developmental evolution · 2021
    Article
  9. A brief review of vertebrate sex evolution with a pledge for integrative research: towards 'Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2021
    Review
  10. The replaceable master of sex determination: bottom-up hypothesis revisited.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2021
    Review
  11. Article
  12. Review
  13. Article
  14. Evolution, Expression, and Function of Gonadal Somatic Cell-Derived Factor.Frontiers in cell and developmental biology · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Maria Assunta Biscotti *Dipartimento di Scienze della Vita e dell'Ambiente, Università Politecnica delle Marche, Ancona, Italy.
Federica Carducci *Dipartimento di Scienze della Vita e dell'Ambiente, Università Politecnica delle Marche, Ancona, Italy.
Marco BaruccaDipartimento di Scienze della Vita e dell'Ambiente, Università Politecnica delle Marche, Ancona, Italy.
Marco GerdolDipartimento di Scienze della Vita, Università di Trieste, Trieste, Italy.
Alberto PallaviciniDipartimento di Scienze della Vita, Università di Trieste, Trieste, Italy.
Manfred Schartl *Developmental Biochemistry, Biocenter, University of Wuerzburg, Wuerzburg, Germany.
Adriana Canapa *Dipartimento di Scienze della Vita e dell'Ambiente, Università Politecnica delle Marche, Ancona, Italy. a.canapa@univpm.it.
Mateus Contar Adolfi *Developmental Biochemistry, Biocenter, University of Wuerzburg, Wuerzburg, Germany.
Marche Polytechnic University · ITUniversity of Trieste · ITTexas State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Amphibians evolved in the Devonian period about 400 Mya and represent a transition step in tetrapod evolution. Among amphibians, high-throughput sequencing data are very limited for Caudata, due to their largest genome sizes among terrestrial vertebrates. In this paper we present the transcriptome from the fire bellied newt Cynops orientalis. Data here presented display a high level of completeness, comparable to the fully sequenced genomes available from other amphibians. Moreover, this work focused on genes involved in gametogenesis and sexual development. Surprisingly, the gsdf gene was identified for the first time in a tetrapod species, so far known only from bony fish and basal sarcopterygians. Our analysis failed to isolate fgf24 and foxl3, supporting the possible loss of both genes in the common ancestor of Rhipidistians. In Cynops, the expression analysis of genes described to be sex-related in vertebrates singled out an expected functional role for some genes, while others displayed an unforeseen behavior, confirming the high variability of the sex-related pathway in vertebrates.

Indexed as

AmphibiansAnimalsFibroblast Growth FactorsFishesGametogenesisGene ExpressionGene Regulatory NetworksGenomeSalamandridaeSex DifferentiationTranscriptomeTransforming Growth Factor betaVertebratesWhole Genome SequencingZebrafish Proteinsfibroblast growth factor 24, zebrafishFibroblast Growth Factorsgonadal soma-derived factor, zebrafishTransforming Growth Factor betaZebrafish Proteins

Identifiers

PMID32214214
PMCPMC7096497
OpenAlexW3013949274

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.