Evidence map›Paper›PMID 32284351›Full record

ArticleRNA (New York, N.Y.)2020

An ancient evolutionary connection between Ribonuclease A and EndoU families.

Arcady Mushegian, Irina Sorokina, Alexey Eroshkin, Mensur Dlakić

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Ribonuclease T2 represents a distinct circularly permutated version of the BECR RNases.Protein science : a publication of the Protein Society · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Cryo-EM Structures of the SARS-CoV-2 Endoribonuclease Nsp15.bioRxiv : the preprint server for biology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 4 institutions in 1 country.

Arcady MushegianDivision of Molecular and Cellular Biosciences, National Science Foundation, Alexandria, Virginia 22314, USA.ORCID 0000-0002-6809-9225
Irina SorokinaStrenic LLC, McLean, Virginia 22102, USA.ORCID 0000-0003-1531-1832
Alexey EroshkinMetabiomics, Carlsbad, California 92008, USA.ORCID 0000-0003-2023-4608
Mensur DlakićDepartment of Microbiology and Immunology, Montana State University, Bozeman, Montana 59717, USA.ORCID 0000-0003-4315-1514
Mars (United States) · USMontana State University · USStructural Analytics (United States) · USU.S. National Science Foundation · US

Funding

Pilot Grants ProgramP30GM110732 · NIGMS · MONTANA STATE UNIVERSITY - BOZEMAN · PI QUINN, MARK T · 2014 to 2018
$5.4M
NIGMS NIH HHS P30 GM110732
6 · The paper itself

Abstract

The ribonuclease A family of proteins is well studied from the biochemical and biophysical points of view, but its evolutionary origins are obscure, as no sequences homologous to this family have been reported outside of vertebrates. Recently, the spatial structure of the ribonuclease domain from a bacterial polymorphic toxin was shown to be closely similar to the structure of vertebrate ribonuclease A. The absence of sequence similarity between the two structures prompted a speculation of convergent evolution of bacterial and vertebrate ribonuclease A-like enzymes. We show that bacterial and homologous archaeal polymorphic toxin ribonucleases with a known or predicted ribonuclease A-like fold are distant homologs of the ribonucleases from the EndoU family, found in all domains of cellular life and in viruses. We also detected a homolog of vertebrate ribonucleases A in the transcriptome assembly of the sea urchin

Indexed as

Amino Acid SequenceAnimalsArchaeaBacteriaBacterial ToxinsEvolution, MolecularPhylogenyRibonuclease, PancreaticSequence AlignmentVertebratesBacterial ToxinsRibonuclease, Pancreaticprotein foldingribonuclease Aribonuclease EndoU

Identifiers

PMID32284351
PMCPMC7297114
OpenAlexW3015642090

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.