Evidence map›Paper›PMID 32293271›Full record

ArticleBMC plant biology2020

Crystal structure of DRIK1, a stress-responsive receptor-like pseudokinase, reveals the molecular basis for the absence of ATP binding.

Bruno Aquino, Viviane C H da Silva, Katlin B Massirer, Paulo Arruda

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 51% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 2 countries.

Bruno AquinoStructural Genomics Consortium, Universidade Estadual de Campinas - UNICAMP, Campinas, SP, 13083-886, Brazil.
Viviane C H da SilvaStructural Genomics Consortium, Universidade Estadual de Campinas - UNICAMP, Campinas, SP, 13083-886, Brazil.
Katlin B MassirerStructural Genomics Consortium, Universidade Estadual de Campinas - UNICAMP, Campinas, SP, 13083-886, Brazil.
Paulo ArrudaStructural Genomics Consortium, Universidade Estadual de Campinas - UNICAMP, Campinas, SP, 13083-886, Brazil. parruda@unicamp.br.ORCID http://orcid.org/0000-0002-8365-731X
Universidade Estadual de Campinas (UNICAMP) · BR

Funding

Fapesp 2014/50897-0Fapesp 2016/23218-0Fapesp 2017/19609-6Fapesp 2018/06442-9
6 · The paper itself

Abstract

backgroundPlants reprogram metabolism and development to rapidly adapt to biotic and abiotic stress. Protein kinases play a significant role in this process by phosphorylating protein substrates that activate or inactivate signaling cascades that regulate cellular and metabolic adaptations. Despite their importance in plant biology, a notably small fraction of the plant kinomes has been studied to date.

resultsIn this report, we describe ZmDRIK1, a stress-responsive receptor-like pseudokinase whose expression is downregulated under water restriction. We show the structural features and molecular basis of the absence of ATP binding exhibited by ZmDRIK1. The ZmDRIK1 kinase domain lacks conserved amino acids that are essential for phosphorylation activity. The crystal structure of the ZmDRIK1 kinase domain revealed the presence of a spine formed by the side chain of the triad Leu

conclusionZmDRIK1 is a novel receptor-like pseudokinase responsive to biotic and abiotic stress. The absence of ATP binding and consequently, the absence of phosphorylation activity, was proven by the crystal structure of the apo form of the protein kinase domain. The expression profiling of the gene encoding ZmDRIK1 suggests this kinase may play a role in downregulating the expression of stress responsive genes that are not necessary under normal conditions. Under biotic and abiotic stress, ZmDRIK1 is down-regulated to release the expression of these stress-responsive genes.

Indexed as

Adenosine TriphosphateCrystallographyGene Expression ProfilingGene Expression Regulation, PlantPlant ProteinsProtein Kinase InhibitorsPyrazolesPyrimidinesReceptor Protein-Tyrosine KinasesStress, PhysiologicalZea maysAdenosine TriphosphateENMD 2076Plant ProteinsProtein Kinase InhibitorsPyrazolesPyrimidinesReceptor Protein-Tyrosine KinasesAbiotic stressBiotic stressDrought stressProtein kinasePseudokinase

Identifiers

PMID32293271
PMCPMC7158045
OpenAlexW3015674841

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.