Evidence map›Paper›PMID 32300197›Full record

ArticleScientific reports2020

Variations in cag pathogenicity island genes of Helicobacter pylori from Latin American groups may influence neoplastic progression to gastric cancer.

Cosmeri Rizzato, Javier Torres, Ofure Obazee, Margarita Camorlinga-Ponce, Esperanza Trujillo, Angelika Stein, Alfonso Mendez-Tenorio, Maria Mercedes Bravo, Federico Canzian, Ikuko Kato

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 2 pooled it
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 2 syntheses or guidelines pooled it, 22 citations in OpenAlex.

  1. Gastric cancer burden and regional disparities among Helicobacter pylori-positive patients in the Americas: a systematic review and meta-analysis.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2026
    Pooled it
  2. Pooled it
  3. Microbiology and molecular biology reviews : MMBR · 2026
    Review
  4. Article
  5. Review
  6. Genomic epidemiology ofFrontiers in microbiology · 2025
    Article
  7. Implications of silver nanoparticles forFrontiers in cellular and infection microbiology · 2024
    Article
  8. Article
  9. Article
  10. Review
  11. International journal of molecular sciences · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 5 countries.

Cosmeri RizzatoDepartment of Translation Research and of New Technologies in Medicine and Surgery, University of Pisa, Pisa, Italy. cosmeri.rizzato@unipi.it.
Javier TorresUnidad de Investigación en Enfermedades Infecciosas, UMAE Pediatría, Instituto Mexicano del Seguro Social, Mexico City, Mexico.
Ofure ObazeeGenomic Epidemiology Group, German Cancer Research Center (DKFZ), Heidelberg, Germany.
Margarita Camorlinga-PonceUnidad de Investigación en Enfermedades Infecciosas, UMAE Pediatría, Instituto Mexicano del Seguro Social, Mexico City, Mexico.
Esperanza TrujilloGrupo de Investigación en Biología del Cáncer. Instituto Nacional de Cancerología, Bogotá, Colombia.
Angelika SteinGenomic Epidemiology Group, German Cancer Research Center (DKFZ), Heidelberg, Germany.
Alfonso Mendez-TenorioLaboratorio de Biotecnología y Bioinformática Genómica, ENCB, Instituto Politécnico Nacional, México City, México.
Maria Mercedes BravoGrupo de Investigación en Biología del Cáncer. Instituto Nacional de Cancerología, Bogotá, Colombia.
Federico CanzianGenomic Epidemiology Group, German Cancer Research Center (DKFZ), Heidelberg, Germany.ORCID http://orcid.org/0000-0002-4261-4583
Ikuko KatoDepartment of Oncology and Pathology, Wayne State University School of Medicine, Detroit, MI, USA.
German Cancer Research Center · DEInstituto Nacional de Cancerología · COMexican Social Security Institute · MXInstituto Politécnico Nacional · MXUniversity of Pisa · ITWayne State University · US

Funding

High Resolution Helicobacter SNP Typing to Identify Carcinogenic cagPAI VariantsR21CA182822 · NCI · WAYNE STATE UNIVERSITY · PI KATO, IKUKO · 2014 to 2015
$320k
NCI NIH HHS R21 CA182822
6 · The paper itself

Abstract

Helicobacter pylori (HP) colonizes the human stomach and induces acute gastritis, peptic ulcer disease, atrophic gastritis, and gastric adenocarcinoma. Increased virulence in HP isolates derives from harboring the cag (cytotoxin-associated genes) pathogenicity island (cagPAI). We analyzed the microvariants in cagPAI genes with the hypothesis that they may play an important role in determining HP virulence. We tested DNAs from cagA positive patients HP isolates; a total of 74 patients with chronic gastritis (CG, N = 37), intestinal metaplasia (IM, N = 21) or gastric cancer (GC, N = 16) from Mexico and Colombia. We selected 520 non-synonymous variants with at least 7.5% frequency in the original sequence outputs or with a minimum of 5 isolates with minor allele. After adjustment for multiple comparisons, no variants were statistically significantly associated with IM or GC. However, 19 non-synonymous showed conventional P-values < 0.05 comparing the frequency of the alleles between the isolates from subjects with gastritis and isolates from subjects with IM or GC; 12 of these showed a significant correlation with the severity of the disease. The present study revealed that several cagPAI genes from Latin American Western HP strains contains a number of non-synonymous variants in relatively high frequencies which could influence on the clinical outcome. However, none of the associations remained statistically significant after adjustment for multiple comparison.

Indexed as

Disease ProgressionGenetic VariationGastritisGenome, BacterialGenomic IslandsHelicobacter pyloriHumansLatin AmericaMetaplasiaNucleotide MotifsPolymorphism, GeneticSequence Analysis, DNAStomach Neoplasms

Identifiers

PMID32300197
PMCPMC7162905
OpenAlexW3017377795

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.