Evidence map›Paper›PMID 32328086›Full record

ArticleFrontiers in genetics2020

Deletion of the

Wenyue Su, Qian Zhou, Yubin Wang, Athar Chishti, Qingshun Q Li, Sujay Dayal, Shayan Shiehzadegan, Ariel Cheng, Clare Moore, Xiaoning Bi and 1 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.3field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Hereditary Spastic Paraplegia: An Update.International journal of molecular sciences · 2022
    Review
  8. Article
  9. Role of Calpain-1 in Neurogenesis.Frontiers in molecular biosciences · 2021
    Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Wenyue SuGraduate College of Biomedical Sciences, Western University of Health Sciences, Pomona, CA, United States.
Qian ZhouGraduate College of Biomedical Sciences, Western University of Health Sciences, Pomona, CA, United States.
Yubin WangGraduate College of Biomedical Sciences, Western University of Health Sciences, Pomona, CA, United States.
Athar ChishtiSackler School of Biomedical Sciences, Tufts University, Boston, MA, United States.
Qingshun Q LiGraduate College of Biomedical Sciences, Western University of Health Sciences, Pomona, CA, United States.
Sujay DayalCollege of Osteopathic Medicine of the Pacific, Western University of Health Sciences, Pomona, CA, United States.
Shayan ShiehzadeganCollege of Osteopathic Medicine of the Pacific, Western University of Health Sciences, Pomona, CA, United States.
Ariel ChengCollege of Osteopathic Medicine of the Pacific, Western University of Health Sciences, Pomona, CA, United States.
Clare MooreCollege of Osteopathic Medicine of the Pacific, Western University of Health Sciences, Pomona, CA, United States.
Xiaoning BiCollege of Osteopathic Medicine of the Pacific, Western University of Health Sciences, Pomona, CA, United States.
Michel BaudryGraduate College of Biomedical Sciences, Western University of Health Sciences, Pomona, CA, United States.
Western University of Health Sciences · USTufts University · US

Funding

Ube3a and PKA regulation of SK2 channelsR15MH101703 · NIMH · WESTERN UNIVERSITY OF HEALTH SCIENCES · PI BI, XIAONING · 2014 to 2025
$1.7M
Roles of UBE3A-mediated p18 regulation in synaptogenesis and synaptic plasticityR01NS104078 · NINDS · WESTERN UNIVERSITY OF HEALTH SCIENCES · PI BAUDRY, MICHEL · 2018 to 2022
$1.5M
NIMH NIH HHS R15 MH101703NINDS NIH HHS R01 NS104078
6 · The paper itself

Abstract

Calpains represent a family of calcium-dependent proteases participating in a multitude of functions under physiological or pathological conditions. Calpain-1 is one of the most studied members of the family, is ubiquitously distributed in organs and tissues, and has been shown to be involved in synaptic plasticity and neuroprotection in mammalian brain. Calpain-1 deletion results in a number of phenotypic alterations. While some of these alterations can be explained by the acute functions of calpain-1, the present study was directed at studying alterations in gene expression that could also account for these phenotypic modifications. RNA-seq analysis identified 354 differentially expressed genes (DEGs) in brain of calpain-1 knock-out mice, as compared to their wild-type strain. Most DEGs were classified in 10 KEGG pathways, with the highest representations in Protein Processing in Endoplasmic Reticulum, MAP kinase and Alzheimer's disease pathways. Most DEGs were down-regulated and validation of a number of these genes indicated a corresponding decreased expression of their encoded proteins. The results indicate that calpain-1 is involved in the regulation of a significant number of genes affecting multiple brain functions. They also indicate that mutations in calpain-1 are likely to be involved in a number of brain disorders.

Indexed as

Alzheimer’s diseasebraincalpain-1long-term potentiationsignaling pathways

Identifiers

PMID32328086
PMCPMC7161415
OpenAlexW3015999324

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.