Evidence map›Paper›PMID 32366847›Full record

ArticleNature communications2020

Genomic landscape of platinum resistant and sensitive testicular cancers.

Chey Loveday, Kevin Litchfield, Paula Z Proszek, Alex J Cornish, Flavia Santo, Max Levy, Geoff Macintyre, Amy Holryod, Peter Broderick, Darshna Dudakia and 15 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
9.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 68 citations in OpenAlex.

  1. Trial
  2. Phase II trial of nivolumab monotherapy and biomarker screening in patients with chemo-refractory germ cell tumors.International journal of urology : official journal of the Japanese Urological Association · 2022
    Trial
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  12. Review
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  15. Biomarkers for Salvage Therapy in Testicular Germ Cell Tumors.International journal of molecular sciences · 2023
    Review
  16. Article
  17. Article
  18. Review
  19. Somatic mutation detection andFrontiers in oncology · 2023
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 7 institutions in 1 country.

Chey Loveday *Division of Genetics & Epidemiology, The Institute of Cancer Research, London, UK.ORCID http://orcid.org/0000-0002-2291-372X
Kevin Litchfield *Division of Genetics & Epidemiology, The Institute of Cancer Research, London, UK.
Paula Z ProszekThe Centre for Molecular Pathology, The Royal Marsden NHS Trust, Sutton, London, UK.
Alex J CornishDivision of Genetics & Epidemiology, The Institute of Cancer Research, London, UK.
Flavia SantoThe Centre for Molecular Pathology, The Royal Marsden NHS Trust, Sutton, London, UK.
Max LevyDivision of Genetics & Epidemiology, The Institute of Cancer Research, London, UK.
Geoff MacintyreCancer Research UK Cambridge Institute, University of Cambridge, Cambridge, UK.ORCID http://orcid.org/0000-0003-3906-467X
Amy HolryodDivision of Genetics & Epidemiology, The Institute of Cancer Research, London, UK.
Peter BroderickDivision of Genetics & Epidemiology, The Institute of Cancer Research, London, UK.ORCID http://orcid.org/0000-0002-8348-5829
Darshna DudakiaDivision of Genetics & Epidemiology, The Institute of Cancer Research, London, UK.
Barbara BentonDivision of Genetics & Epidemiology, The Institute of Cancer Research, London, UK.
Maise Al BakirCancer Research UK Lung Cancer Centre of Excellence, University College London Cancer Institute, London, UK.
Crispin HileyCancer Research UK Lung Cancer Centre of Excellence, University College London Cancer Institute, London, UK.
Emily GristDivision of Molecular Pathology, The Institute of Cancer Research, London, UK.
Charles SwantonCancer Research UK Lung Cancer Centre of Excellence, University College London Cancer Institute, London, UK.ORCID http://orcid.org/0000-0002-4299-3018
Robert HuddartAcademic Radiotherapy Unit, Institute of Cancer Research, London, UK.ORCID http://orcid.org/0000-0003-3604-1990
Tom PowlesBarts Cancer Institute, Queen Mary University, London, UK.
Simon ChowdhuryDepartment of Oncology, Guys and St Thomas' NHS Foundation Trust, London, UK.
Janet ShipleyDivision of Molecular Pathology, The Institute of Cancer Research, London, UK.
Simon O'ConnorThe Centre for Molecular Pathology, The Royal Marsden NHS Trust, Sutton, London, UK.
James D BrentonCancer Research UK Cambridge Institute, University of Cambridge, Cambridge, UK.ORCID http://orcid.org/0000-0002-5738-6683
Alison ReidAcademic Uro-oncology Unit, The Royal Marsden NHS Foundation Trust, Sutton, London, UK.
David Gonzalez de CastroCentre for Cancer Research and Cell Biology, Queen's University Belfast, Belfast, UK.ORCID http://orcid.org/0000-0003-0580-5636
Richard S HoulstonDivision of Genetics & Epidemiology, The Institute of Cancer Research, London, UK.ORCID http://orcid.org/0000-0002-5268-0242
Clare TurnbullDivision of Genetics & Epidemiology, The Institute of Cancer Research, London, UK. clare.turnbull@icr.ac.uk.
Institute of Cancer Research · GBRoyal Marsden NHS Foundation Trust · GBCancer Research UK · GBUniversity of Cambridge · GBGuy's and St Thomas' NHS Foundation Trust · GBQueen Mary University of London · GBQueen's University Belfast · GB

Funding

Cancer Research UK 15601Cancer Research UK 22905Cancer Research UK C1298/A8362Medical Research Council MR/P014712/2
6 · The paper itself

Abstract

While most testicular germ cell tumours (TGCTs) exhibit exquisite sensitivity to platinum chemotherapy, ~10% are platinum resistant. To gain insight into the underlying mechanisms, we undertake whole exome sequencing and copy number analysis in 40 tumours from 26 cases with platinum-resistant TGCT, and combine this with published genomic data on an additional 624 TGCTs. We integrate analyses for driver mutations, mutational burden, global, arm-level and focal copy number (CN) events, and SNV and CN signatures. Albeit preliminary and observational in nature, these analyses provide support for a possible mechanistic link between early driver mutations in RAS and KIT and the widespread copy number events by which TGCT is characterised.

Indexed as

DNA Copy Number VariationsDrug Resistance, NeoplasmExome SequencingGenetic Predisposition to DiseaseGenomicsHumansMaleMutationNeoplasms, Germ Cell and EmbryonalOrganoplatinum CompoundsPlatinumProto-Oncogene Proteins c-kitras ProteinsSignal TransductionTesticular NeoplasmsOrganoplatinum CompoundsPlatinumProto-Oncogene Proteins c-kitras Proteins

Identifiers

PMID32366847
PMCPMC7198558
OpenAlexW3020851428

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.