Evidence map›Paper›PMID 32369491›Full record

ArticlePLoS genetics2020

Rare protein-altering variants in ANGPTL7 lower intraocular pressure and protect against glaucoma.

Yosuke Tanigawa, Michael Wainberg, Juha Karjalainen, Tuomo Kiiskinen, Guhan Venkataraman, Susanna Lemmelä, Joni A Turunen, Robert R Graham, Aki S Havulinna, Markus Perola and 4 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed, 3 pooled it
4.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 3 syntheses or guidelines pooled it, 53 citations in OpenAlex.

  1. Pooled it
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  4. Article
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  6. Review
  7. Review
  8. Article
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  11. Article
  12. Article
  13. ANGPTL7 and Its Role in IOP and Glaucoma.Investigative ophthalmology & visual science · 2024
    Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Metastasis from the tumor interior and necrotic core formation are regulated by breast cancer-derived angiopoietin-like 7.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  19. Article
  20. 10 Years of GWAS in intraocular pressure.Frontiers in genetics · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 2 countries.

Yosuke TanigawaDepartment of Biomedical Data Science, School of Medicine, Stanford University, Stanford, California, United States of America.ORCID 0000-0001-9759-157X
Michael WainbergDepartment of Biomedical Data Science, School of Medicine, Stanford University, Stanford, California, United States of America.ORCID 0000-0001-6061-0239
Juha KarjalainenProgram in Medical and Population Genetics and Stanley Center for Psychiatric Research, Broad Institute of Harvard and MIT, Cambridge, Massachusetts, United States of America.
Tuomo KiiskinenInstitute for Molecular Medicine Finland (FIMM), University of Helsinki, Helsinki, Finland.ORCID 0000-0002-6306-8227
Guhan VenkataramanDepartment of Biomedical Data Science, School of Medicine, Stanford University, Stanford, California, United States of America.ORCID 0000-0003-0754-6631
Susanna LemmeläInstitute for Molecular Medicine Finland (FIMM), University of Helsinki, Helsinki, Finland.
Joni A TurunenDepartment of Ophthalmology, University of Helsinki and Helsinki University Hospital, Helsinki, Finland.ORCID 0000-0002-9569-9146
Robert R GrahamMaze Therapeutics, South San Francisco, California, United States of America.ORCID 0000-0001-7151-4277
Aki S HavulinnaInstitute for Molecular Medicine Finland (FIMM), University of Helsinki, Helsinki, Finland.ORCID 0000-0002-4787-8959
Markus PerolaFinnish Institute for Health and Welfare, Helsinki, Finland.ORCID 0000-0003-4842-1667
Aarno PalotieProgram in Medical and Population Genetics and Stanley Center for Psychiatric Research, Broad Institute of Harvard and MIT, Cambridge, Massachusetts, United States of America.
FinnGen
Mark J DalyProgram in Medical and Population Genetics and Stanley Center for Psychiatric Research, Broad Institute of Harvard and MIT, Cambridge, Massachusetts, United States of America.ORCID 0000-0002-0949-8752
Manuel A RivasDepartment of Biomedical Data Science, School of Medicine, Stanford University, Stanford, California, United States of America.ORCID 0000-0003-1457-9925
Broad Institute · USStanford University · USUniversity of Helsinki · FIFinnish Institute for Health and Welfare · FIMaze (United States) · US

Funding

POSTDOCTORAL TRAINING IN MEDICAL INFORMATION SCIENCEST15LM007033 · NLM · STANFORD UNIVERSITY · PI SYLVIA KATINA PLEVRITIS · 1985 to 2026
$25.5M
Optimizing imputation for diverse populations in a distributed frameworkU01HG009080 · NHGRI · STANFORD UNIVERSITY · PI KENNY, EIMEAR ELIZABETH · 2016 to 2020
$5.2M
SOFTWARE FOR LARGE-SCALE INFERENCE OF THE GENETICS OF LIFESTYLE MEASURES, BIOMARKERS, AND COMMON AND RARE DISEASESR01HG010140 · NHGRI · STANFORD UNIVERSITY · PI KUNDAJE, ANSHUL, MONTGOMERY, STEPHEN · 2018 to 2022
$2.0M
NHGRI NIH HHS R01 HG010140NHGRI NIH HHS U01 HG009080NLM NIH HHS T15 LM007033
6 · The paper itself

Abstract

Protein-altering variants that are protective against human disease provide in vivo validation of therapeutic targets. Here we use genotyping data from UK Biobank (n = 337,151 unrelated White British individuals) and FinnGen (n = 176,899) to conduct a search for protein-altering variants conferring lower intraocular pressure (IOP) and protection against glaucoma. Through rare protein-altering variant association analysis, we find a missense variant in ANGPTL7 in UK Biobank (rs28991009, p.Gln175His, MAF = 0.8%, genotyped in 82,253 individuals with measured IOP and an independent set of 4,238 glaucoma patients and 250,660 controls) that significantly lowers IOP (β = -0.53 and -0.67 mmHg for heterozygotes, -3.40 and -2.37 mmHg for homozygotes, P = 5.96 x 10-9 and 1.07 x 10-13 for corneal compensated and Goldman-correlated IOP, respectively) and is associated with 34% reduced risk of glaucoma (P = 0.0062). In FinnGen, we identify an ANGPTL7 missense variant at a greater than 50-fold increased frequency in Finland compared with other populations (rs147660927, p.Arg220Cys, MAF Finland = 4.3%), which was genotyped in 6,537 glaucoma patients and 170,362 controls and is associated with a 29% lower glaucoma risk (P = 1.9 x 10-12 for all glaucoma types and also protection against its subtypes including exfoliation, primary open-angle, and primary angle-closure). We further find three rarer variants in UK Biobank, including a protein-truncating variant, which confer a strong composite lowering of IOP (P = 0.0012 and 0.24 for Goldman-correlated and corneal compensated IOP, respectively), suggesting the protective mechanism likely resides in the loss of interaction or function. Our results support inhibition or down-regulation of ANGPTL7 as a therapeutic strategy for glaucoma.

Indexed as

Polymorphism, Single NucleotideAdultAgedAged, 80 and overAngiopoietin-Like Protein 7Angiopoietin-like ProteinsBiological Specimen BanksCase-Control StudiesCohort StudiesFemaleFinlandGene FrequencyGenetic Predisposition to DiseaseGenetics, PopulationGenome-Wide Association StudyGlaucomaAngiopoietin-Like Protein 7Angiopoietin-like ProteinsANGPTL7 protein, human

Identifiers

PMID32369491
PMCPMC7199928
OpenAlexW3022576198

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.