Evidence map›Paper›PMID 32384449›Full record

ArticleMedicine2020

Genetic risk scores based on risk-associated single nucleotide polymorphisms can reveal inherited risk of bladder cancer in Chinese population.

Chenyang Xu, Xiaoling Lin, Wei Qian, Rong Na, Hongjie Yu, Haifei Jia, Haowen Jiang, Zujun Fang, S Lilly Zheng, Qiang Ding and 3 more

Open access · goldAbstract read
In one paragraph

Article in Medicine, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 7 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Chenyang XuDepartment of Urology.
Xiaoling LinFudan Institute of Urology, Huashan Hospital, Fudan University, Shanghai, PR China.
Wei QianDepartment of Urology.
Rong NaDepartment of Urology, Ruijin Hospital, Shanghai Jiaotong University School of Medicine, Shanghai, PR China.
Hongjie YuProgram for Personalized Cancer Care, NorthShore University HealthSystem, Evanston, Illinois, USA.
Haifei JiaDepartment of Urology.
Haowen JiangDepartment of Urology.
Zujun FangDepartment of Urology.
S Lilly ZhengProgram for Personalized Cancer Care, NorthShore University HealthSystem, Evanston, Illinois, USA.
Qiang DingDepartment of Urology.
Yishuo WuDepartment of Urology.
Jie ZhengDepartment of Urology.
Jianfeng XuFudan Institute of Urology, Huashan Hospital, Fudan University, Shanghai, PR China.
Fudan University · CNNorthShore University HealthSystem · USHuashan Hospital · CNRuijin Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genome-wide association studies have identified single nucleotide polymorphisms (SNPs) associated with bladder cancer (BCa) risk in Caucasian and East Asian population. The objective of this study was to validate these SNPs in Chinese population and evaluate whether these SNPs could differentiate the individual inherited risk for BCa.A case-control study including 581 BCa cases and 1561 healthy controls was performed. Germline DNA samples from all individuals were genotyped for eight SNPs. Genetic risk score (GRS) was calculated for each individual based on the odds ratios and risk allele frequencies of five risk-associated SNPs.Among eight SNPs evaluated in this study, rs798766 at 4p16.3 [OR = 1.39 (1.15-1.67), P < .001], rs9642880 [OR = 1.17 (1.06-1.30), P < .001] and rs4813953 at 20p12.2 [OR = 1.09 (1.02-1.17), P = .016] were found associated with BCa risk in Chinese population. A genetic risk score was established based on five SNPs (including the above three SNPs and two other SNPs which have the consistent direction with previous reported genome-wide association study). The mean GRS was significantly higher in BCa cases than controls (1.22 vs. 1.01, P < .001). When subjects were categorized into low- (<0.8), average- (0.8-1.2), and high-risk (>1.2) groups, the likelihoods of BCa were 25.2%, 33.7% and 55.0%, respectively (P-trend < 2.2 × 10). In subgroup analyses, no significant difference was observed in mean GRS among BCa patients with different stages or grades.In conclusion, two SNPs derived from East Asian and one SNP from Caucasian were associated with BCa risk in Chinese population. These results provided additional information of genetic risks for BCa in Chinese population. Genetic risk score based on these SNPs can reveal inherited risk of BCa, and may have potential for modifying personalized cancer screening strategy.

Indexed as

Polymorphism, Single NucleotideUrinary Bladder NeoplasmsAgedAsian PeopleCase-Control StudiesChinaFemaleGene FrequencyGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansMaleMicrotubule-Associated ProteinsMiddle AgedOdds RatioReceptor, Fibroblast Growth Factor, Type 3FGFR3 protein, humanMicrotubule-Associated ProteinsReceptor, Fibroblast Growth Factor, Type 3TACC3 protein, human

Identifiers

PMID32384449
PMCPMC7220229
OpenAlexW3022205540

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.