Evidence map›Paper›PMID 32401151›Full record

ReviewTranscription2020

A combinatorial view of old and new RNA polymerase II modifications.

Danielle E Lyons, Sarah McMahon, Melanie Ott

Abstract readReview
In one paragraph

Review in Transcription, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Danielle E LyonsGladstone Institute of Virology and Immunology, San Francisco, CA, USA.ORCID 0000-0001-9857-4720
Sarah McMahonGladstone Institute of Virology and Immunology, San Francisco, CA, USA.ORCID 0000-0002-8614-1415
Melanie OttGladstone Institute of Virology and Immunology, San Francisco, CA, USA.ORCID 0000-0002-5697-1274

Funding

Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Monica Gandhi · 1988 to 2026
$93.6M
Role of Factor Acetylation in the Regulation of HIV TranscriptionR37AI083139 · NIAID · J. DAVID GLADSTONE INSTITUTES · PI Melanie Maria Ott · 2019 to 2026
$5.5M
A new model of accelerated immune aging in HIV-infected drug usersDP1DA038043 · NIDA · J. DAVID GLADSTONE INSTITUTES · PI OTT, MELANIE MARIA · 2014 to 2019
$4.8M
Modeling intestinal dysfunction in HIV infection with organoid technologyR01DK123746 · NIDDK · J. DAVID GLADSTONE INSTITUTES · PI OTT, MELANIE MARIA, SOMSOUK, MA · 2020 to 2024
$3.9M
Targeting lysine methylation for latency reversal in HIV-infected drug usersR01DA043142 · NIDA · J. DAVID GLADSTONE INSTITUTES · PI OTT, MELANIE MARIA · 2016 to 2020
$3.0M
Role of Lipid Droplets in Hepatitis C Virus InfectionR01AI097552 · NIAID · J. DAVID GLADSTONE INSTITUTES · PI OTT, MELANIE MARIA · 2014 to 2018
$2.4M
Single-Cell Transcriptomics of Non-Activated Latently Infected T cells Isolated from HIV+ Drug UsersR61DA048444 · NIDA · J. DAVID GLADSTONE INSTITUTES · PI OTT, MELANIE MARIA · 2019 to 2021
$2.0M
Harnessing the RNA-Binding Properties of Cas13a for HIV-1 Self-TestingR61AI140465 · NIAID · J. DAVID GLADSTONE INSTITUTES · PI OTT, MELANIE MARIA · 2018 to 2020
$1.5M
NIAID NIH HHS P30 AI027763NIAID NIH HHS R01 AI097552NIAID NIH HHS R37 AI083139NIAID NIH HHS R61 AI140465NIDA NIH HHS DP1 DA038043NIDA NIH HHS R01 DA043142NIDA NIH HHS R61 DA048444NIDDK NIH HHS R01 DK123746
6 · The paper itself

Abstract

The production of mRNA is a dynamic process that is highly regulated by reversible post-translational modifications of the C-terminal domain (CTD) of RNA polymerase II. The CTD is a highly repetitive domain consisting mostly of the consensus heptad sequence Tyr1-Ser2-Pro3-Thr4-Ser5-Pro6-Ser7. Phosphorylation of serine residues within this repeat sequence is well studied, but modifications of all residues have been described. Here, we focus on integrating newly identified and lesser-studied CTD post-translational modifications into the existing framework. We also review the growing body of work demonstrating crosstalk between different CTD modifications and the functional consequences of such crosstalk on the dynamics of transcriptional regulation.

Indexed as

Protein Processing, Post-TranslationalRNA, MessengerRNA Polymerase IITranscription, GeneticRNA, MessengerRNA Polymerase IICrosstalkGene regulationPost-translational modificationRNA polymerase IITranscription regulation

Identifiers

PMID32401151
PMCPMC7549748

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.