Evidence map›Paper›PMID 32449701›Full record

ArticleJournal of visualized experiments : JoVE2020

In Situ Detection of Ribonucleoprotein Complex Assembly in the C. elegans Germline using Proximity Ligation Assay.

Nicholas J Day, Xiaobo Wang, Ekaterina Voronina

Open access · greenAbstract readVideo-Audio Media
In one paragraph

Article in Journal of visualized experiments : JoVE, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.8field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. DLC-1 facilitates germ granule assembly inMolecular biology of the cell · 2022
    Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Nicholas J DayDivision of Biological Sciences, University of Montana.
Xiaobo WangDivision of Biological Sciences, University of Montana.
Ekaterina VoroninaDivision of Biological Sciences, University of Montana; ekaterina.voronina@umontana.edu.
University of Montana · US

Funding

Surveillance genome sequencing to detect SARS-CoV-2 virus variants in MontanaP20GM103546 · NIGMS · UNIVERSITY OF MONTANA · PI BOWLER, BRUCE E · 2012 to 2021
$19.2M
Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
P granules and control of germ cells developmentR01GM109053 · NIGMS · UNIVERSITY OF MONTANA · PI VORONINA, EKATERINA · 2014 to 2022
$2.5M
Acquisition of a Nikon A1 confocal laser-scanning microscope with PicoQuant FCS & FLIM upgradeS10OD021806 · OD · UNIVERSITY OF MONTANA · PI ROSS, J B ALEXANDER · 2016 to 2016
$555k
NIGMS NIH HHS P20 GM103546NIGMS NIH HHS R01 GM109053NIH HHS P40 OD010440NIH HHS S10 OD021806
6 · The paper itself

Abstract

Understanding when and where protein-protein interactions (PPIs) occur is critical to understanding protein function in the cell and how broader processes such as development are affected. The Caenorhabditis elegans germline is a great model system for studying PPIs that are related to the regulation of stem cells, meiosis, and development. There are a variety of well-developed techniques that allow proteins of interest to be tagged for recognition by standard antibodies, making this system advantageous for proximity ligation assay (PLA) reactions. As a result, the PLA is able to show where PPIs occur in a spatial and temporal manner in germlines more effectively than alternative approaches. Described here is a protocol for the application and quantification of this technology to probe PPIs in the C. elegans germline.

Indexed as

AnimalsBiological AssayCaenorhabditis elegansCaenorhabditis elegans ProteinsGerm CellsProtein BindingRibonucleoproteinsCaenorhabditis elegans ProteinsRibonucleoproteins

Identifiers

PMID32449701
PMCPMC7377351
OpenAlexW3022793211

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.