Evidence map›Paper›PMID 32451376›Full record

ArticleNature communications2020

Nucleoporin 153 links nuclear pore complex to chromatin architecture by mediating CTCF and cohesin binding.

Shinichi Kadota, Jianhong Ou, Yuming Shi, Jeannie T Lee, Jiayu Sun, Eda Yildirim

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 89 citations in OpenAlex.

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  16. Nucleoporins cooperate with Polycomb silencers to promote transcriptional repression and repair at DNA double-strand breaks.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  17. Investigating oncoprotein-mediated chromatin dysregulation inbioRxiv : the preprint server for biology · 2025
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Shinichi KadotaDepartment of Cell Biology, Duke Medical Center, Durham, NC, 27710, USA.
Jianhong OuDepartment of Cell Biology, Duke Medical Center, Durham, NC, 27710, USA.ORCID http://orcid.org/0000-0002-8652-2488
Yuming ShiDepartment of Cell Biology, Duke Medical Center, Durham, NC, 27710, USA.
Jeannie T LeeDepartment of Molecular Biology, Massachusetts General Hospital, Boston, MA, 02114, USA.ORCID http://orcid.org/0000-0001-7786-8850
Jiayu SunDepartment of Cell Biology, Duke Medical Center, Durham, NC, 27710, USA.ORCID http://orcid.org/0000-0002-1648-8245
Eda YildirimDepartment of Cell Biology, Duke Medical Center, Durham, NC, 27710, USA. eda.yildirim@duke.edu.ORCID http://orcid.org/0000-0002-4796-3854
Duke University · USHarvard University · US

Funding

Polycomb complexes targeted to specific loci by non-coding RNA co-factorsR01GM090278 · NIGMS · MASSACHUSETTS GENERAL HOSPITAL · PI LEE, JEANNIE T · 2010 to 2017
$3.7M
Spreading of Xist RNA and Polycomb complexes along the inactive X-chromosome.R01HD097665 · NICHD · MASSACHUSETTS GENERAL HOSPITAL · PI LEE, JEANNIE T · 2019 to 2023
$3.5M
Howard Hughes Medical InstituteNICHD NIH HHS R01 HD097665NIGMS NIH HHS R01 GM090278
6 · The paper itself

Abstract

Nucleoporin proteins (Nups) have been proposed to mediate spatial and temporal chromatin organization during gene regulation. Nevertheless, the molecular mechanisms in mammalian cells are not well understood. Here, we report that Nucleoporin 153 (NUP153) interacts with the chromatin architectural proteins, CTCF and cohesin, and mediates their binding across cis-regulatory elements and TAD boundaries in mouse embryonic stem (ES) cells. NUP153 depletion results in altered CTCF and cohesin binding and differential gene expression - specifically at the bivalent developmental genes. To investigate the molecular mechanism, we utilize epidermal growth factor (EGF)-inducible immediate early genes (IEGs). We find that NUP153 controls CTCF and cohesin binding at the cis-regulatory elements and POL II pausing during the basal state. Furthermore, efficient IEG transcription relies on NUP153. We propose that NUP153 links the nuclear pore complex (NPC) to chromatin architecture allowing genes that are poised to respond rapidly to developmental cues to be properly modulated.

Indexed as

AnimalsCCCTC-Binding FactorCell Cycle ProteinsCell LineChromatinChromosomal Proteins, Non-HistoneCohesinsGenes, Immediate-EarlyHeLa CellsHumansMiceMouse Embryonic Stem CellsNuclear PoreNuclear Pore Complex ProteinsProtein BindingProtein Interaction Domains and MotifsCCCTC-Binding FactorCell Cycle ProteinsChromatinChromosomal Proteins, Non-HistoneCohesinsCtcf protein, mouseNuclear Pore Complex ProteinsNUP153 protein, humanNup153 protein, mouseRNA Polymerase II

Identifiers

PMID32451376
PMCPMC7248104
OpenAlexW3028195244

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.