Evidence map›Paper›PMID 32508251›Full record

ArticleEpigenetics2020

Association ofSOD3 promoter DNA methylation with its down-regulation in breast carcinomas.

Brandon Griess, David Klinkebiel, Alice Kueh, Michelle Desler, Kenneth Cowan, Matthew Fitzgerald, Melissa Teoh-Fitzgerald

Open access · bronzeAbstract readHistorical Article
In one paragraph

Article in Epigenetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Observational
  8. Article
  9. The Mechanism of DNA Methylation and miRNA in Breast Cancer.International journal of molecular sciences · 2023
    Review
  10. Article
  11. Impact of EcSOD Perturbations in Cancer Progression.Antioxidants (Basel, Switzerland) · 2021
    Review
  12. Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Brandon GriessDepartment of Biochemistry and Molecular Biology, Fred and Pamela Buffett Cancer Center, College of Medicine, University of Nebraska Medical Center , Omaha, NE, USA.
David KlinkebielDepartment of Biochemistry and Molecular Biology, Fred and Pamela Buffett Cancer Center, College of Medicine, University of Nebraska Medical Center , Omaha, NE, USA.
Alice KuehEppley Institute for Cancer Research, Fred & Pamela Buffett Cancer Center, University of Nebraska Medical Center , Omaha, NE, USA.
Michelle DeslerEppley Institute for Cancer Research, Fred & Pamela Buffett Cancer Center, University of Nebraska Medical Center , Omaha, NE, USA.
Kenneth CowanEppley Institute for Cancer Research, Fred & Pamela Buffett Cancer Center, University of Nebraska Medical Center , Omaha, NE, USA.
Matthew FitzgeraldCollege of Nursing, University of Nebraska Medical Center , Omaha, NE, USA.
Melissa Teoh-FitzgeraldDepartment of Biochemistry and Molecular Biology, Fred and Pamela Buffett Cancer Center, College of Medicine, University of Nebraska Medical Center , Omaha, NE, USA.ORCID 0000-0001-9765-6812
University of Nebraska Medical Center · US

Funding

CHEMICAL CARCINOGENESIS &CANCER BIOLOGYT32CA009476 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI Jennifer D. Black · 1988 to 2026
$6.2M
Extracellular Redox Signaling in mammary tumor-fibroblast interactionsR01CA182086 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI TEOH, MELISSA LAI TEE · 2014 to 2018
$1.5M
NCI NIH HHS R01 CA182086NCI NIH HHS T32 CA009476
6 · The paper itself

Abstract

Superoxide dismutase 3 (SOD3) is a secreted antioxidant enzyme that regulates reactive oxygen species in the microenvironment. It is also a potential tumour suppressor gene that is significantly downregulated in breast cancer. We have previously shown that its mRNA expression is inversely correlated with relapse free survival in breast cancer patients. This study aimed to investigate the correlation of SOD3 promoter DNA methylation with its expression in different molecular subtypes of breast carcinoma. We found that SOD3 expression was significantly reduced in breast carcinoma samples compared to normal tissues with the lowest levels observed in Luminal B subtype. Pyrosequencing analysis showed significant increase in methylation levels in the SOD3 promoter region (-108 and -19 from the TSS) in tumours vs normal tissues (53.6% vs 25.2%). The highest degree of correlation between methylation and SOD3 expression levels was observed in Luminal B subtype (Spearman's R = -0.540, P < 0.00093). In this subtype, the -78 CpG position is the most significantly methylated site. The Spearman's coefficient analysis also indicated the most significant correlation of DNA methylation at this site with SOD3 gene expression levels in tumours vs. normal tissues (R = -0.5816, P < 6.9E-12). Moreover, copy number variation analysis of TCGA database revealed that the more aggressive Triple Negative and Her2+ subtypes had higher levels of SOD3 gene deletion. The predominantly down-regulated expression pattern of SOD3 and the various genetic and epigenetic deregulations of its expression suggest that loss of this antioxidant promotes an advantageous tumour-promoting microenvironment in breast cancer.

Indexed as

DNA MethylationBreast NeoplasmsCarcinomaDown-RegulationEpigenesis, GeneticFemaleGene Expression Regulation, NeoplasticHistory, MedievalHumansPromoter Regions, GeneticSuperoxide DismutaseSOD3 protein, humanSuperoxide Dismutasebreast cancerDNA methylationextracellular superoxide dismutasepyrosequencingSOD3

Identifiers

PMID32508251
PMCPMC7678930
OpenAlexW3033998376

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.