Evidence map›Paper›PMID 32528012›Full record

ArticleScientific reports2020

N-terminal deletion of Swi3 created by the deletion of a dubious ORF YJL175W mitigates protein burden effect in S. cerevisiae.

Nozomu Saeki, Yuichi Eguchi, Reiko Kintaka, Koji Makanae, Yuichi Shichino, Shintaro Iwasaki, Manabu Kanno, Nobutada Kimura, Hisao Moriya

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Nozomu SaekiGraduate School of Environmental and Life Science, Okayama University, Okayama, Japan.
Yuichi EguchiCenter for Mechanisms of Evolution, School of Life Sciences, Arizona State University, Arizona, USA.
Reiko KintakaDonnelly Center for Cellular and Biomolecular Research, Department of Medical Genetics, University of Toronto, Toronto, Canada.
Koji MakanaeGraduate School of Environmental and Life Science, Okayama University, Okayama, Japan.
Yuichi ShichinoRNA Systems Biochemistry Laboratory, RIKEN Cluster for Pioneering Research, Saitama, Japan.
Shintaro IwasakiRNA Systems Biochemistry Laboratory, RIKEN Cluster for Pioneering Research, Saitama, Japan.
Manabu KannoBioproduction Research Institute, National Institute of Advanced Industrial Science and Technology, Ibaraki, Japan.
Nobutada KimuraBioproduction Research Institute, National Institute of Advanced Industrial Science and Technology, Ibaraki, Japan.
Hisao MoriyaGraduate School of Environmental and Life Science, Okayama University, Okayama, Japan. hisaom@cc.okayama-u.ac.jp.
Okayama University · JPNational Institute of Advanced Industrial Science and Technology · JPPioneer (Japan) · JPArizona State University · USUniversity of Toronto · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Extreme overproduction of gratuitous proteins can overload cellular protein production resources, leading to growth defects, a phenomenon known as the protein burden/cost effect. Genetic screening in the budding yeast Saccharomyces cerevisiae has isolated several dubious ORFs whose deletions mitigated the protein burden effect, but individual characterization thereof has yet to be delineated. We found that deletion of the YJL175W ORF yielded an N-terminal deletion of Swi3, a subunit of the SWI/SNF chromatin remodeling complex, and partial loss of function of Swi3. The deletion mutant showed a reduction in transcription of genes encoding highly expressed, secreted proteins and an overall reduction in translation. Mutations in the chromatin remodeling complex could thus mitigate the protein burden effect, likely by reallocating residual cellular resources used to overproduce proteins. This cellular state might also be related to cancer cells, as they frequently harbor mutations in the SWI/SNF complex.

Indexed as

Sequence DeletionNuclear ProteinsOpen Reading FramesRNA, MessengerSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription, GeneticNuclear ProteinsRNA, MessengerSaccharomyces cerevisiae ProteinsSWI3 protein, S cerevisiae

Identifiers

PMID32528012
PMCPMC7289859
OpenAlexW3035159320

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.