Evidence map›Paper›PMID 32546260›Full record

ArticleBMC biology2020

Multi-omics analysis delineates the distinct functions of sub-cellular acetyl-CoA pools in Toxoplasma gondii.

Joachim Kloehn, Rebecca D Oppenheim, Ghizal Siddiqui, Pieter-Jan De Bock, Sunil Kumar Dogga, Yohann Coute, Mohamed-Ali Hakimi, Darren J Creek, Dominique Soldati-Favre

Open access · goldAbstract read
In one paragraph

Article in BMC biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed, 1 pooled it
5.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 1 synthesis or guideline pooled it, 49 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Toxoplasma gondii SIR2A Promotes Tachyzoite Invasion via Lysine Deacetylase Activity.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2026
    Article
  4. Review
  5. Review
  6. Review
  7. Article
  8. The apicoplast localized isocitrate dehydrogenase is needed forFrontiers in cellular and infection microbiology · 2025
    Article
  9. Article
  10. Article
  11. Proteomics Applications inPathogens (Basel, Switzerland) · 2023
    Review
  12. Article
  13. TgKDAC4: A Unique Deacetylase ofMicroorganisms · 2023
    Article
  14. The mitochondrion ofProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  15. Article
  16. Article
  17. Review
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Joachim KloehnDepartment of Microbiology and Molecular Medicine, CMU, University of Geneva, Rue Michel-Servet 1, 1211, Geneva, Switzerland.
Rebecca D OppenheimDepartment of Microbiology and Molecular Medicine, CMU, University of Geneva, Rue Michel-Servet 1, 1211, Geneva, Switzerland.
Ghizal SiddiquiDrug Delivery, Disposition and Dynamics, Monash Institute of Pharmaceutical Sciences, Monash University, Parkville campus, Parkville, VIC, 3052, Australia.
Pieter-Jan De BockUniversity Grenoble Alpes, CEA, INSERM, IRIG, BGE, F-38000, Grenoble, France.
Sunil Kumar DoggaDepartment of Microbiology and Molecular Medicine, CMU, University of Geneva, Rue Michel-Servet 1, 1211, Geneva, Switzerland.
Yohann CouteUniversity Grenoble Alpes, CEA, INSERM, IRIG, BGE, F-38000, Grenoble, France.
Mohamed-Ali HakimiEpigenetic and Parasites Team, UMR5163/LAPM, Domaine de la Merci, Jean Roget Institute, 38700, La Tronche, France.
Darren J CreekDrug Delivery, Disposition and Dynamics, Monash Institute of Pharmaceutical Sciences, Monash University, Parkville campus, Parkville, VIC, 3052, Australia.
Dominique Soldati-FavreDepartment of Microbiology and Molecular Medicine, CMU, University of Geneva, Rue Michel-Servet 1, 1211, Geneva, Switzerland. Dominique.Soldati-Favre@unige.ch.
University of Geneva · CHMonash University · AUCEA Grenoble · FRUniversité Grenoble Alpes · FR

Funding

Agence Nationale de la Recherche ANR-10-INBS-08-01 and ANR-12-BSV3-0009European Research Council 695596European Research Council Consolidator Grant N°614880 Hosting TOXOKommission zur Förderung der wissenschaftlichen Forschung ) IZLSZ3_170867LabEx ParaFrap ANR-11-LABX-0024
6 · The paper itself

Abstract

backgroundAcetyl-CoA is a key molecule in all organisms, implicated in several metabolic pathways as well as in transcriptional regulation and post-translational modification. The human pathogen Toxoplasma gondii possesses at least four enzymes which generate acetyl-CoA in the nucleo-cytosol (acetyl-CoA synthetase (ACS); ATP citrate lyase (ACL)), mitochondrion (branched-chain α-keto acid dehydrogenase-complex (BCKDH)) and apicoplast (pyruvate dehydrogenase complex (PDH)). Given the diverse functions of acetyl-CoA, we know very little about the role of sub-cellular acetyl-CoA pools in parasite physiology.

resultsTo assess the importance and functions of sub-cellular acetyl-CoA-pools, we measured the acetylome, transcriptome, proteome and metabolome of parasites lacking ACL/ACS or BCKDH. We demonstrate that ACL/ACS constitute a synthetic lethal pair. Loss of both enzymes causes a halt in fatty acid elongation, hypo-acetylation of nucleo-cytosolic and secretory proteins and broad changes in gene expression. In contrast, loss of BCKDH results in an altered TCA cycle, hypo-acetylation of mitochondrial proteins and few specific changes in gene expression. We provide evidence that changes in the acetylome, transcriptome and proteome of cells lacking BCKDH enable the metabolic adaptations and thus the survival of these parasites.

conclusionsUsing multi-omics and molecular tools, we obtain a global and integrative picture of the role of distinct acetyl-CoA pools in T. gondii physiology. Cytosolic acetyl-CoA is essential and is required for the synthesis of parasite-specific fatty acids. In contrast, loss of mitochondrial acetyl-CoA can be compensated for through metabolic adaptations implemented at the transcriptional, translational and post-translational level.

Indexed as

Acetyl Coenzyme AMetabolomeProteomeProtozoan ProteinsToxoplasmaTranscriptomeAcetyl Coenzyme AProteomeProtozoan ProteinsAcetyl-CoAAcetyl-CoA synthetase (ACS)AcetylomeATP citrate lyase (ACL)Branched-chain α-keto acid dehydrogenase-complex (BCKDH)Formate/nitrite transporter (FNT)MetabolismMulti-omicsPhosphoenolpyruvate carboxykinase (PEPCK)Toxoplasma gondii

Identifiers

PMID32546260
PMCPMC7296777
OpenAlexW3035547070

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.