Evidence map›Paper›PMID 32587248›Full record

ArticleNature communications2020

Chemical genetics strategy to profile kinase target engagement reveals role of FES in neutrophil phagocytosis.

Tom van der Wel, Riet Hilhorst, Hans den Dulk, Tim van den Hooven, Nienke M Prins, Joost A P M Wijnakker, Bogdan I Florea, Eelke B Lenselink, Gerard J P van Westen, Rob Ruijtenbeek and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Tom van der WelDepartment of Molecular Physiology, Leiden Institute of Chemistry, Leiden University & Oncode Institute, Leiden, The Netherlands.ORCID http://orcid.org/0000-0002-6449-3233
Riet HilhorstPamGene International BV, 's-Hertogenbosch, The Netherlands.ORCID http://orcid.org/0000-0002-8261-1299
Hans den DulkDepartment of Molecular Physiology, Leiden Institute of Chemistry, Leiden University & Oncode Institute, Leiden, The Netherlands.
Tim van den HoovenPamGene International BV, 's-Hertogenbosch, The Netherlands.
Nienke M PrinsDepartment of Molecular Physiology, Leiden Institute of Chemistry, Leiden University & Oncode Institute, Leiden, The Netherlands.
Joost A P M WijnakkerDepartment of Molecular Physiology, Leiden Institute of Chemistry, Leiden University & Oncode Institute, Leiden, The Netherlands.
Bogdan I FloreaDepartment of Bio-organic Synthesis, Leiden Institute of Chemistry, Leiden University, Leiden, The Netherlands.
Eelke B LenselinkDepartment of Drug Discovery & Safety, Leiden Academic Centre for Drug Research, Leiden University, Leiden, The Netherlands.
Gerard J P van WestenDepartment of Drug Discovery & Safety, Leiden Academic Centre for Drug Research, Leiden University, Leiden, The Netherlands.ORCID http://orcid.org/0000-0003-0717-1817
Rob RuijtenbeekPamGene International BV, 's-Hertogenbosch, The Netherlands.
Herman S OverkleeftDepartment of Bio-organic Synthesis, Leiden Institute of Chemistry, Leiden University, Leiden, The Netherlands.
Allard KapteinCovalution Biosciences BV, Ravenstein, The Netherlands.
Tjeerd BarfCovalution Biosciences BV, Ravenstein, The Netherlands.
Mario van der SteltDepartment of Molecular Physiology, Leiden Institute of Chemistry, Leiden University & Oncode Institute, Leiden, The Netherlands. m.van.der.stelt@chem.leidenuniv.nl.ORCID http://orcid.org/0000-0002-1029-5717
Leiden University · NLPamGene (Netherlands) · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chemical tools to monitor drug-target engagement of endogenously expressed protein kinases are highly desirable for preclinical target validation in drug discovery. Here, we describe a chemical genetics strategy to selectively study target engagement of endogenous kinases. By substituting a serine residue into cysteine at the DFG-1 position in the ATP-binding pocket, we sensitize the non-receptor tyrosine kinase FES towards covalent labeling by a complementary fluorescent chemical probe. This mutation is introduced in the endogenous FES gene of HL-60 cells using CRISPR/Cas9 gene editing. Leveraging the temporal and acute control offered by our strategy, we show that FES activity is dispensable for differentiation of HL-60 cells towards macrophages. Instead, FES plays a key role in neutrophil phagocytosis via SYK kinase activation. This chemical genetics strategy holds promise as a target validation method for kinases.

Indexed as

Fluorescent DyesProto-Oncogene Proteins c-fesATP-Binding Cassette TransportersCell DifferentiationCell LineCRISPR-Cas SystemsFluorescence Resonance Energy TransferGene EditingHumansMacrophagesMutationNeutrophilsPhagocytosisProtein-Tyrosine KinasesSignal TransductionSyk KinaseATP-Binding Cassette TransportersFluorescent DyesProtein-Tyrosine KinasesProto-Oncogene Proteins c-fesSyk Kinase

Identifiers

PMID32587248
PMCPMC7316778
OpenAlexW3037752835

What Socratic holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.