Evidence map›Paper›PMID 32599863›Full record

ArticleInternational journal of molecular sciences2020

Experimentally Determined Long Intrinsically Disordered Protein Regions Are Now Abundant in the Protein Data Bank.

Alexander Miguel Monzon, Marco Necci, Federica Quaglia, Ian Walsh, Giuseppe Zanotti, Damiano Piovesan, Silvio C E Tosatto

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Review
  2. Article
  3. Expose flexible conformations for intrinsically disordered protein.Current research in structural biology · 2025
    Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Intrinsically Disordered Proteins: An Overview.International journal of molecular sciences · 2022
    Review
  13. Review
  14. Databases for intrinsically disordered proteins.Acta crystallographica. Section D, Structural biology · 2022
    Review
  15. Review
  16. Article
  17. Article
  18. The protein disorder cycle.Biophysical reviews · 2021
    Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Alexander Miguel MonzonDepartment of Biomedical Sciences, University of Padua, 35131 Padua, Italy.ORCID 0000-0003-0362-8218
Marco NecciDepartment of Biomedical Sciences, University of Padua, 35131 Padua, Italy.
Federica QuagliaDepartment of Biomedical Sciences, University of Padua, 35131 Padua, Italy.
Ian WalshBioprocessing Technology Institute, A*STAR, Singapore 138668, Singapore.ORCID 0000-0003-3994-5522
Giuseppe ZanottiDepartment of Biomedical Sciences, University of Padua, 35131 Padua, Italy.ORCID 0000-0002-0945-6501
Damiano PiovesanDepartment of Biomedical Sciences, University of Padua, 35131 Padua, Italy.ORCID 0000-0001-8210-2390
Silvio C E TosattoDepartment of Biomedical Sciences, University of Padua, 35131 Padua, Italy.ORCID 0000-0003-4525-7793

Funding

H2020 Marie Skłodowska-Curie Actions No 778247 and No 823886MSCA Seal of Excellence @UniPD TOSA_MSCASOE18_01
6 · The paper itself

Abstract

Intrinsically disordered protein regions are commonly defined from missing electron density in X-ray structures. Experimental evidence for long disorder regions (LDRs) of at least 30 residues was so far limited to manually curated proteins. Here, we describe a comprehensive and large-scale analysis of experimental LDRs for 3133 unique proteins, demonstrating an increasing coverage of intrinsic disorder in the Protein Data Bank (PDB) in the last decade. The results suggest that long missing residue regions are a good quality source to annotate intrinsically disordered regions and perform functional analysis in large data sets. The consensus approach used to define LDRs allows to evaluate context dependent disorder and provide a common definition at the protein level.

Indexed as

Databases, ProteinModels, MolecularAnimalsComputational BiologyHumansIntrinsically Disordered ProteinsIntrinsically Disordered Proteinsdisordered regionsintrinsically disordered proteinsprotein flexibilitystructure missing residues

Identifiers

PMID32599863
PMCPMC7349999

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.