Evidence map›Paper›PMID 32603407›Full record

ArticleThe Journal of experimental medicine2020

Single-cell analysis of germinal-center B cells informs on lymphoma cell of origin and outcome.

Antony B Holmes, Clarissa Corinaldesi, Qiong Shen, Rahul Kumar, Nicolo Compagno, Zhong Wang, Mor Nitzan, Eli Grunstein, Laura Pasqualucci, Riccardo Dalla-Favera and 1 more

Abstract read
In one paragraph

Article in The Journal of experimental medicine, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 128 papers.

0numbers the graph read from it
0cells of the map it votes in
128citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

128 citing papers in PubMed.

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68 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Antony B HolmesInstitute for Cancer Genetics, Columbia University, New York, NY.
Clarissa CorinaldesiInstitute for Cancer Genetics, Columbia University, New York, NY.
Qiong ShenInstitute for Cancer Genetics, Columbia University, New York, NY.
Rahul KumarInstitute for Cancer Genetics, Columbia University, New York, NY.
Nicolo CompagnoInstitute for Cancer Genetics, Columbia University, New York, NY.
Zhong WangDepartment of Pathology and Cell Biology, Columbia University, New York, NY.
Mor NitzanHarvard University, Cambridge, MA.
Eli GrunsteinDepartment of Otolaryngology Head and Neck Surgery, Columbia University, New York, NY.
Laura PasqualucciInstitute for Cancer Genetics, Columbia University, New York, NY.
Riccardo Dalla-FaveraInstitute for Cancer Genetics, Columbia University, New York, NY.
Katia BassoInstitute for Cancer Genetics, Columbia University, New York, NY.

Funding

Tumor Biology and Microenvironment ProgramP30CA013696 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Anil K Rustgi · 1985 to 2026
$115.3M
From pathogenesis to new therapeutic targets in Diffuse Large B cell LymphomaR35CA210105 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Riccardo Dalla-Favera · 2016 to 2026
$10.0M
NCI NIH HHS P30 CA013696NCI NIH HHS R35 CA210105
6 · The paper itself

Abstract

In response to T cell-dependent antigens, mature B cells are stimulated to form germinal centers (GCs), the sites of B cell affinity maturation and the cell of origin (COO) of most B cell lymphomas. To explore the dynamics of GC B cell development beyond the known dark zone and light zone compartments, we performed single-cell (sc) transcriptomic analysis on human GC B cells and identified multiple functionally linked subpopulations, including the distinct precursors of memory B cells and plasma cells. The gene expression signatures associated with these GC subpopulations were effective in providing a sc-COO for ∼80% of diffuse large B cell lymphomas (DLBCLs) and identified novel prognostic subgroups of DLBCL.

Indexed as

B-LymphocytesCell LineageFluorescent Antibody TechniqueGene Expression ProfilingGerminal CenterHumansLymphomaSingle-Cell Analysis

Identifiers

PMID32603407
PMCPMC7537389

What Socratic holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.