Evidence map›Paper›PMID 32620097›Full record

SynthesisBMC medical genetics2020

Association of PIN3 16-bp duplication polymorphism of TP53 with breast cancer risk in Mali and a meta-analysis.

Brehima Diakite, Yaya Kassogue, Guimogo Dolo, Oumar Kassogue, Mamadou Lassine Keita, Brian Joyce, Erin Neuschler, Jun Wang, Jonah Musa, Cheick Bougari Traore and 9 more

Open access · goldAbstract readMeta-Analysis
In one paragraph

Synthesis in BMC medical genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 3 pooled it
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 3 syntheses or guidelines pooled it, 10 citations in OpenAlex.

  1. Pooled it
  2. Association Between theFrontiers in genetics · 2022
    Pooled it
  3. Pooled it
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 7 institutions in 4 countries.

Brehima DiakiteFaculty of Medicine and Odontostomatology, University of Technical and Technological Sciences of Bamako (USTTB), 1805, Point G, Bamako, Mali. br.diakite@yahoo.fr.ORCID 0000-0001-8296-5292
Yaya KassogueFaculty of Medicine and Odontostomatology, University of Technical and Technological Sciences of Bamako (USTTB), 1805, Point G, Bamako, Mali.
Guimogo DoloFaculty of Medicine and Odontostomatology, University of Technical and Technological Sciences of Bamako (USTTB), 1805, Point G, Bamako, Mali.
Oumar KassogueFaculty of Medicine and Odontostomatology, University of Technical and Technological Sciences of Bamako (USTTB), 1805, Point G, Bamako, Mali.
Mamadou Lassine KeitaUniversity Teaching Hospital Point G, Bamako, Mali.
Brian JoycePreventive Medicine Department, Cancer Epidemiology and Prevention, Northwestern University, Chicago, IL, 60611, USA.
Erin NeuschlerDepartment of Radiology, College of Medicine, University of Illinois at Chicago, Chicago, IL, 60612, USA.
Jun WangPreventive Medicine Department, Cancer Epidemiology and Prevention, Northwestern University, Chicago, IL, 60611, USA.
Jonah MusaPreventive Medicine Department, Cancer Epidemiology and Prevention, Northwestern University, Chicago, IL, 60611, USA.
Cheick Bougari TraoreFaculty of Medicine and Odontostomatology, University of Technical and Technological Sciences of Bamako (USTTB), 1805, Point G, Bamako, Mali.
Bakarou KamateFaculty of Medicine and Odontostomatology, University of Technical and Technological Sciences of Bamako (USTTB), 1805, Point G, Bamako, Mali.
Etienne DembeleInstitute for Global Health, Northwestern University, Chicago, IL, 60611, USA.
Sellama NadifiHassan II Univesity Aïn chock, Casablanca, Morocco.
Mercy IsicheiDepartment of Obstetrics and Gynecology, Faculty of Medical Sciences, University of Jos, Jos, Plateau State, Nigeria.
Jane L HollDepartment of Neurology, The University of Chicago, Chicago, IL, 60637, USA.
Robert MurphyInstitute for Global Health, Northwestern University, Chicago, IL, 60611, USA.
Seydou DoumbiaFaculty of Medicine and Odontostomatology, University of Technical and Technological Sciences of Bamako (USTTB), 1805, Point G, Bamako, Mali.
Lifang HouPreventive Medicine Department, Cancer Epidemiology and Prevention, Northwestern University, Chicago, IL, 60611, USA.
Mamoudou MaigaFaculty of Medicine and Odontostomatology, University of Technical and Technological Sciences of Bamako (USTTB), 1805, Point G, Bamako, Mali.
Northwestern University · USUniversité des Sciences, des Techniques et des Technologies de Bamako · MLUniversity of Bamako · MLUniversity of Chicago · USUniversity of Hassan II Casablanca · MAUniversity of Illinois Chicago · USUniversity of Jos · NG

Funding

Partnership for Global Health Research Training Program (Renewal)-Supplement for OBSSR, NCI, NCI-AIDS and NIDCDD43TW010543 · FIC · HARVARD UNIVERSITY D/B/A HARVARD SCHOOL OF PUBLIC HEALTH · PI Wafaie W Fawzi, DAVIDSON HOWES HAMER · 2017 to 2026
$12.1M
West African Center of Excellence for Global Health Bioinformatics Research TrainingU2RTW010673 · FIC · UNIV OF SCIENCES, TECH & TECH OF BAMAKO · PI DOUMBIA, SEYDOU, LI, JIAN · 2017 to 2021
$1.2M
FIC NIH HHS D43 TW010543FIC NIH HHS U2R TW010673
6 · The paper itself

Abstract

backgroundBreast cancer, the most common tumor in women in Mali and worldwide has been linked to several risk factors, including genetic factors, such as the PIN3 16-bp duplication polymorphism of TP53. The aim of our study was to evaluate the role of the PIN3 16-bp duplication polymorphism in the susceptibility to breast cancer in the Malian population and to perform a meta-analysis to better understand the correlation with data from other populations.

methodsWe analyzed the PIN3 16-bp duplication polymorphism in blood samples of 60 Malian women with breast cancer and 60 healthy Malian women using PCR. In addition, we performed a meta-analysis of case-control study data from international databases, including Pubmed, Harvard University Library, Genetics Medical Literature Database, Genesis Library and Web of Science. Overall, odds ratio (OR) with 95% CI from fixed and random effects models were determined. Inconsistency was used to assess heterogeneity between studies and publication bias was estimated using the funnel plot.

resultsIn the studied Malian patients, a significant association of PIN3 16-bp duplication polymorphism with breast cancer risk was observed in dominant (A1A2 + A2A2 vs. A1A1: OR = 2.26, CI 95% = 1.08-4.73; P = 0.02) and additive (A2 vs. A1: OR = 1.87, CI 95% = 1.05-3.33; P = 0.03) models, but not in the recessive model (P = 0.38). In the meta-analysis, nineteen (19) articles were included with a total of 6018 disease cases and 4456 controls. Except for the dominant model (P = 0.15), an increased risk of breast cancer was detected with the recessive (OR = 1.46, 95% CI = 1.15-1.85; P = 0.002) and additive (OR = 1.11, 95% CI = 1.02-1.19; P = 0.01) models.

conclusionThe case-control study showed that PIN3 16-bp duplication polymorphism of TP53 is a significant risk factor for breast cancer in Malian women. These findings are supported by data from the meta-analysis carried out on different ethnic groups around the world.

Indexed as

Genetic Association StudiesGenetic Predisposition to DiseasePolymorphism, GeneticAdultBase PairingBreast NeoplasmsCase-Control StudiesFemaleGenetic HeterogeneityHumansMaliModels, GeneticOdds RatioPublication BiasRisk FactorsTumor Suppressor Protein p53Tumor Suppressor Protein p53Breast cancerMalian populationMeta-analysisPIN316-bp duplicationTP53

Identifiers

PMID32620097
PMCPMC7333399
OpenAlexW3039166754

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.