Evidence map›Paper›PMID 32669336›Full record

ArticleJournal of virology2020

Coevolution of Adeno-associated Virus Capsid Antigenicity and Tropism through a Structure-Guided Approach.

L Patrick Havlik, Katherine E Simon, J Kennon Smith, Kelli A Klinc, Longping V Tse, Daniel K Oh, Marco M Fanous, Rita M Meganck, Mario Mietzsch, Jürgen Kleinschmidt and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of virology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed, 1 pooled it
6.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 1 synthesis or guideline pooled it, 57 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Article
  6. The amazing AAV capsids: Into the structure-verse.Molecular therapy. Methods & clinical development · 2025
    Review
  7. An ADAR2-mimic base editor for efficient C-to-U RNA editing in vivo.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  8. Article
  9. Article
  10. Advances in AAV capsid engineering: Integrating rational design, directed evolution and machine learning.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Review
  11. Current trends in gene therapy to treat inherited disorders of the brain.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Review
  12. Article
  13. Review
  14. Review
  15. Identification of a novel neutralization epitope in rhesus AAVs.Molecular therapy. Methods & clinical development · 2024
    Article
  16. Review
  17. Article
  18. Review
  19. Review
  20. Redirecting AAV vectors to extrahepatic tissues.Molecular therapy : the journal of the American Society of Gene Therapy · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

L Patrick HavlikCurriculum in Genetics and Molecular Biology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.
Katherine E SimonDepartment of Surgery, Duke University School of Medicine, Durham, North Carolina, USA.
J Kennon SmithDepartment of Biochemistry and Molecular Biology, Center for Structural Biology, McKnight Brain Institute, University of Florida, Gainesville, Florida, USA.
Kelli A KlincSchool of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.
Longping V TseSchool of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.
Daniel K OhDepartment of Surgery, Duke University School of Medicine, Durham, North Carolina, USA.
Marco M FanousDepartment of Surgery, Duke University School of Medicine, Durham, North Carolina, USA.
Rita M MeganckCurriculum in Genetics and Molecular Biology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.
Mario MietzschDepartment of Biochemistry and Molecular Biology, Center for Structural Biology, McKnight Brain Institute, University of Florida, Gainesville, Florida, USA.
Jürgen KleinschmidtGerman Cancer Research Center, Research Program Infection and Cancer, Heidelberg, Germany.
Mavis Agbandje-McKennaDepartment of Biochemistry and Molecular Biology, Center for Structural Biology, McKnight Brain Institute, University of Florida, Gainesville, Florida, USA mckenna@ufl.edu aravind.asokan@duke.edu.
Aravind AsokanDepartment of Surgery, Duke University School of Medicine, Durham, North Carolina, USA mckenna@ufl.edu aravind.asokan@duke.edu.ORCID 0000-0001-5563-4877
Duke University · USUniversity of North Carolina at Chapel Hill · USUniversity of Florida · USGerman Cancer Research Center · DE

Funding

Determinants of AAV TropismR01HL089221 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Aravind Asokan · 2009 to 2026
$8.1M
Structural studies of AAV capsids and their glycan receptor interactionsR01GM082946 · NIGMS · UNIVERSITY OF FLORIDA · PI ROBERT MCKENNA · 2007 to 2026
$6.1M
BASIC MICROBIOLOGY &INFECTIOUS DISEASEST32AI007110 · NIAID · UNIVERSITY OF FLORIDA · PI Stephanie M Karst · 1985 to 2026
$4.3M
Evolving High Potency AAV Vectors for Neuromuscular Genome EditingUG3AR075336 · NIAMS · DUKE UNIVERSITY · PI ASOKAN, ARAVIND · 2018 to 2020
$2.1M
RE-ENGINEERING AAV GENOME PACKAGINGR01GM127708 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ASOKAN, ARAVIND · 2018 to 2021
$2.0M
NHLBI NIH HHS R01 HL089221NIAID NIH HHS T32 AI007110NIAMS NIH HHS UG3 AR075336NIGMS NIH HHS R01 GM082946NIGMS NIH HHS R01 GM127708
6 · The paper itself

Abstract

Adeno-associated viruses (AAV) are composed of nonenveloped, icosahedral protein shells that can be adapted to package and deliver recombinant therapeutic DNA. Approaches to engineer recombinant capsids for gene therapy applications have focused on rational design or library-based approaches that can address one or two desirable attributes; however, there is an unmet need to comprehensively improve AAV vector properties. Such cannot be achieved by utilizing sequence data alone but requires harnessing the three-dimensional (3D) structural properties of AAV capsids. Here, we solve the structures of a natural AAV isolate complexed with antibodies using cryo-electron microscopy and harness this structural information to engineer AAV capsid libraries through saturation mutagenesis of different antigenic footprints. Each surface loop was evolved by infectious cycling in the presence of a helper adenovirus to yield a new AAV variant that then serves as a template for evolving the next surface loop. This stepwise process yielded a humanized AAV8 capsid (AAVhum.8) displaying nonnatural surface loops that simultaneously display tropism for human hepatocytes, increased gene transfer efficiency, and neutralizing antibody evasion. Specifically, AAVhum.8 can better evade neutralizing antisera from multiple species than AAV8. Further, AAVhum.8 displays robust transduction in a human liver xenograft mouse model with expanded tropism for both murine and human hepatocytes. This work supports the hypothesis that critical properties, such as AAV capsid antibody evasion and tropism, can be coevolved by combining rational design and library-based evolution for clinical gene therapy.

Indexed as

TropismAnimalsAntibodies, NeutralizingAntibodies, ViralCapsidCapsid ProteinsCell LineCryoelectron MicroscopyDependovirusGenetic TherapyHepatocytesHumansMiceMolecular Docking SimulationAntibodies, NeutralizingAntibodies, ViralCapsid Proteinsadeno-associated virusgene therapyliver gene deliveryneutralizing antibodiestropism

Identifiers

PMID32669336
PMCPMC7495376
OpenAlexW3042273632

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.