Evidence map›Paper›PMID 32717170›Full record

ReviewCirculation research2020

Epigenetic and Transcriptional Networks Underlying Atrial Fibrillation.

Antoinette F van Ouwerkerk, Amelia W Hall, Zachary A Kadow, Sonja Lazarevic, Jasmeet S Reyat, Nathan R Tucker, Rangarajan D Nadadur, Fernanda M Bosada, Valerio Bianchi, Patrick T Ellinor and 6 more

Erratum issuedAbstract readReview
In one paragraph

Review in Circulation research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 54 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed, 3 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 3 syntheses or guidelines pooled it.

  1. Pooled it
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  15. Single-Nucleotide Polymorphisms,International journal of molecular sciences · 2025
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors.

Antoinette F van OuwerkerkFrom the Department of Medical Biology, Amsterdam University Medical Center, Academic Medical Center, The Netherlands (A.F.v.O., F.M.B., V.M.C.).
Amelia W HallCardiovascular Research Center, Massachusetts General Hospital, Boston (A.W.H., N.R.T., P.T.E.).
Zachary A KadowProgram in Developmental Biology (Z.A.K., J.F.M.).
Sonja LazarevicDepartments of Pediatrics, Pathology, and Human Genetics, University of Chicago, IL (S.L., R.D.N., I.P.M.).
Jasmeet S ReyatInstitute of Cardiovascular Sciences, University of Birmingham, United Kingdom (J.S.R., L.F., P.K.).
Nathan R TuckerCardiovascular Research Center, Massachusetts General Hospital, Boston (A.W.H., N.R.T., P.T.E.).
Rangarajan D NadadurDepartments of Pediatrics, Pathology, and Human Genetics, University of Chicago, IL (S.L., R.D.N., I.P.M.).
Fernanda M BosadaFrom the Department of Medical Biology, Amsterdam University Medical Center, Academic Medical Center, The Netherlands (A.F.v.O., F.M.B., V.M.C.).
Valerio BianchiOncode Institute, Hubrecht Institute-KNAW and University Medical Center Utrecht, the Netherlands (V.B., W.d.L.).
Patrick T EllinorCardiovascular Research Center, Massachusetts General Hospital, Boston (A.W.H., N.R.T., P.T.E.).
Larissa FabritzInstitute of Cardiovascular Sciences, University of Birmingham, United Kingdom (J.S.R., L.F., P.K.).
James F MartinProgram in Developmental Biology (Z.A.K., J.F.M.).
Wouter de LaatOncode Institute, Hubrecht Institute-KNAW and University Medical Center Utrecht, the Netherlands (V.B., W.d.L.).
Paulus KirchhofInstitute of Cardiovascular Sciences, University of Birmingham, United Kingdom (J.S.R., L.F., P.K.).
Ivan P MoskowitzDepartments of Pediatrics, Pathology, and Human Genetics, University of Chicago, IL (S.L., R.D.N., I.P.M.).
Vincent M ChristoffelsFrom the Department of Medical Biology, Amsterdam University Medical Center, Academic Medical Center, The Netherlands (A.F.v.O., F.M.B., V.M.C.).

Funding

IDENTIFICATION OF COMMON GENETIC VARIANTS FOR ATRIAL FIBRILLATION AND PR INTERVALR01HL092577 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI BENJAMIN, EMELIA J., ELLINOR, PATRICK THOMAS · 2009 to 2025
$20.6M
MULTIDISCIPLINARY CARDIAC SCIENCEST32HL007381 · NHLBI · UNIVERSITY OF CHICAGO · PI JEANNE M DECARA, Yoav Gilad · 1985 to 2026
$12.5M
Pitx2 in atrial fibrillationR01HL118761 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI MARTIN, JAMES F · 2014 to 2025
$6.1M
Hippo and Wnt Signaling in Cardiac RegenerationR01HL127717 · NHLBI · TEXAS HEART INSTITUTE · PI MARTIN, JAMES F · 2016 to 2023
$4.4M
Training Program in Developmental BiologyT32HD055164 · NICHD · UNIVERSITY OF CHICAGO · PI Sally Horne-Badovinac, Paschalis Kratsios · 2008 to 2026
$3.6M
AFGen Consortium: Atrial Fibrillation Genomics to Functional AnalysesR01HL128914 · NHLBI · BOSTON UNIVERSITY MEDICAL CAMPUS · PI BENJAMIN, EMELIA J., ELLINOR, PATRICK THOMAS · 2015 to 2018
$3.1M
Optical elastography for assessment of myocardial regenerationR01HL130804 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI LARIN, KIRILL V, MARTIN, JAMES F · 2016 to 2019
$2.9M
The molecular basis of cardiac differentiation controlR01HL147571 · NHLBI · UNIVERSITY OF CHICAGO · PI MOSKOWITZ, IVAN PAUL · 2019 to 2023
$2.8M
Gene Regulatory Networks for Cardiac MorphogenesisR01HL126509 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI CONLON, FRANK LEO, CRISTEA, ILEANA M. · 2017 to 2020
$2.5M
Gene Regulatory Non-Coding RNAs in the Human HeartR01HL148719 · NHLBI · UNIVERSITY OF CHICAGO · PI MOSKOWITZ, IVAN PAUL, RUTHENBURG, ALEXANDER JACKSON · 2019 to 2022
$2.3M
Mentoring in Arrhythmia ResearchK24HL105780 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI ELLINOR, PATRICK THOMAS · 2011 to 2020
$1.2M
Defining the functional variation underlying atrial fibrillation riskK01HL140187 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI TUCKER, NATHAN R · 2018 to 2022
$858k
British Heart Foundation AA/18/2/34218British Heart Foundation FS/13/43/30324British Heart Foundation PG/17/30/32961NHLBI NIH HHS F30 HL131298NHLBI NIH HHS F30 HL145908NHLBI NIH HHS F31 HL144023NHLBI NIH HHS K01 HL140187NHLBI NIH HHS K24 HL105780NHLBI NIH HHS R01 HL092577NHLBI NIH HHS R01 HL118761NHLBI NIH HHS R01 HL126509NHLBI NIH HHS R01 HL127717NHLBI NIH HHS R01 HL128914NHLBI NIH HHS R01 HL130804NHLBI NIH HHS R01 HL147571NHLBI NIH HHS R01 HL148719NHLBI NIH HHS T32 HL007381NICHD NIH HHS T32 HD055164
6 · The paper itself

Abstract

Genome-wide association studies have uncovered over a 100 genetic loci associated with atrial fibrillation (AF), the most common arrhythmia. Many of the top AF-associated loci harbor key cardiac transcription factors, including PITX2, TBX5, PRRX1, and ZFHX3. Moreover, the vast majority of the AF-associated variants lie within noncoding regions of the genome where causal variants affect gene expression by altering the activity of transcription factors and the epigenetic state of chromatin. In this review, we discuss a transcriptional regulatory network model for AF defined by effector genes in Genome-wide association studies loci. We describe the current state of the field regarding the identification and function of AF-relevant gene regulatory networks, including variant regulatory elements, dose-sensitive transcription factor functionality, target genes, and epigenetic states. We illustrate how altered transcriptional networks may impact cardiomyocyte function and ionic currents that impact AF risk. Last, we identify the need for improved tools to identify and functionally test transcriptional components to define the links between genetic variation, epigenetic gene regulation, and atrial function.

Indexed as

Epigenesis, GeneticGene Regulatory NetworksAnimalsAtrial FibrillationGenetic LociHumansTranscriptomeatrial fibrillationgenetic variationgenome-wide association studymyocytes, cardiactranscription factors

Identifiers

PMID32717170
PMCPMC8315291

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.