Evidence map›Paper›PMID 32727924›Full record

ArticleG3 (Bethesda, Md.)2020

Phylogenomic Analyses of Non-Dikarya Fungi Supports Horizontal Gene Transfer Driving Diversification of Secondary Metabolism in the Amphibian Gastrointestinal Symbiont,

Javier F Tabima, Ian A Trautman, Ying Chang, Yan Wang, Stephen Mondo, Alan Kuo, Asaf Salamov, Igor V Grigoriev, Jason E Stajich, Joseph W Spatafora

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
4.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 71 citations in OpenAlex.

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  16. A genetic tool to express long fungal biosynthetic genes.Fungal biology and biotechnology · 2023
    Article
  17. Article
  18. Article
  19. Regulation of the Leucine Metabolism inJournal of fungi (Basel, Switzerland) · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Javier F TabimaDepartment of Botany and Plant Pathology, College of Agricultural Sciences, Oregon State University, Corvallis tabimaj@oregonstate.edu.ORCID 0000-0002-3603-2691
Ian A TrautmanDepartment of Botany and Plant Pathology, College of Agricultural Sciences, Oregon State University, Corvallis.
Ying ChangDepartment of Botany and Plant Pathology, College of Agricultural Sciences, Oregon State University, Corvallis.ORCID 0000-0001-8972-1557
Yan WangDepartment of Microbiology and Plant Pathology, University of California-Riverside, California.ORCID 0000-0002-5950-8904
Stephen MondoUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, California.ORCID 0000-0001-5797-0647
Alan KuoUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, California.ORCID 0000-0003-3514-3530
Asaf SalamovUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, California.ORCID 0000-0002-3349-8138
Igor V GrigorievDepartment of Plant and Microbial Biology, University of California-Berkeley, California.ORCID 0000-0002-3136-8903
Jason E StajichDepartment of Microbiology and Plant Pathology, University of California-Riverside, California.ORCID 0000-0002-7591-0020
Joseph W SpataforaDepartment of Botany and Plant Pathology, College of Agricultural Sciences, Oregon State University, Corvallis.ORCID 0000-0002-7183-1384
Oregon State University · USJoint Genome Institute · USUniversity of California, Riverside · USLawrence Berkeley National Laboratory · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Research into secondary metabolism (SM) production by fungi has resulted in the discovery of diverse, biologically active compounds with significant medicinal applications. The fungi rich in SM production are taxonomically concentrated in the subkingdom Dikarya, which comprises the phyla Ascomycota and Basidiomycota. Here, we explore the potential for SM production in Mucoromycota and Zoopagomycota, two phyla of nonflagellated fungi that are not members of Dikarya, by predicting and identifying core genes and gene clusters involved in SM. The majority of non-Dikarya have few genes and gene clusters involved in SM production except for the amphibian gut symbionts in the genus

Indexed as

EntomophthoralesGene Transfer, HorizontalAmphibiansAnimalsFungiPhylogenySecondary MetabolismBasidiobolushorizontal gene transfersecondary metabolismsiderophoreszygomycetes

Identifiers

PMID32727924
PMCPMC7466969
OpenAlexW3047117736

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.