Evidence map›Paper›PMID 32737300›Full record

ArticleNature communications2020

Distinct genetic architectures and environmental factors associate with host response to the γ2-herpesvirus infections.

Neneh Sallah, Wendell Miley, Nazzarena Labo, Tommy Carstensen, Segun Fatumo, Deepti Gurdasani, Martin O Pollard, Alexander T Dilthey, Alexander J Mentzer, Vickie Marshall and 10 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.8field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. Article
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  4. LANA-specific CD4Nature communications · 2025
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  8. Review
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  11. Comparative Analysis of the Humoral Immune Response to the EBV Proteome across EBV-Related Malignancies.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2023
    Article
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  14. Review
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 11 institutions in 5 countries.

Neneh SallahThe Wellcome Sanger Institute, Wellcome Genome Campus, Cambridge, UK. Neneh.Sallah@lshtm.ac.uk.ORCID http://orcid.org/0000-0002-2953-5311
Wendell MileyViral Oncology Section, AIDS and Cancer Virus Program, Frederick National Laboratory for Cancer Research, Leidos Biomedical Research Inc., Frederick, MD, USA.
Nazzarena LaboViral Oncology Section, AIDS and Cancer Virus Program, Frederick National Laboratory for Cancer Research, Leidos Biomedical Research Inc., Frederick, MD, USA.
Tommy CarstensenThe Wellcome Sanger Institute, Wellcome Genome Campus, Cambridge, UK.
Segun FatumoThe Wellcome Sanger Institute, Wellcome Genome Campus, Cambridge, UK.
Deepti GurdasaniThe Wellcome Sanger Institute, Wellcome Genome Campus, Cambridge, UK.
Martin O PollardThe Wellcome Sanger Institute, Wellcome Genome Campus, Cambridge, UK.ORCID http://orcid.org/0000-0001-8738-0920
Alexander T DiltheyInstitute of Medical Microbiology and Hospital Hygiene, Heinrich Heine University Düsseldorf, 40225, Düsseldorf, Germany.ORCID http://orcid.org/0000-0002-6394-4581
Alexander J MentzerWellcome Centre for Human Genetics, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0002-4502-2209
Vickie MarshallViral Oncology Section, AIDS and Cancer Virus Program, Frederick National Laboratory for Cancer Research, Leidos Biomedical Research Inc., Frederick, MD, USA.
Elena M Cornejo CastroViral Oncology Section, AIDS and Cancer Virus Program, Frederick National Laboratory for Cancer Research, Leidos Biomedical Research Inc., Frederick, MD, USA.ORCID http://orcid.org/0000-0003-1480-1397
Cristina PomillaThe Wellcome Sanger Institute, Wellcome Genome Campus, Cambridge, UK.
Elizabeth H YoungThe Wellcome Sanger Institute, Wellcome Genome Campus, Cambridge, UK.
Gershim AsikiAfrican Population and Health Research Center, Nairobi, Kenya.ORCID http://orcid.org/0000-0002-9966-1153
Martin L HibberdLondon School of Hygiene & Tropical Medicine, London, UK.ORCID http://orcid.org/0000-0001-8587-1849
Manjinder SandhuDepartment of Medicine, University of Cambridge, Cambridge, UK.ORCID http://orcid.org/0000-0002-2725-142X
Paul KellamDepartment of Infectious Diseases, Imperial College London, London, UK.ORCID http://orcid.org/0000-0003-3166-4734
Robert Newton *MRC/UVRI at the London School of Hygiene & Tropical Medicine, Entebbe, Uganda.
Denise Whitby *Viral Oncology Section, AIDS and Cancer Virus Program, Frederick National Laboratory for Cancer Research, Leidos Biomedical Research Inc., Frederick, MD, USA.
Inês Barroso *The Wellcome Sanger Institute, Wellcome Genome Campus, Cambridge, UK. ines.barroso@exeter.ac.uk.ORCID http://orcid.org/0000-0001-5800-4520
Leidos (United States) · USUniversity of Cambridge · GBWellcome Sanger Institute · GBAfrican Population and Health Research Center · KECentre for Human Genetics · GBHeinrich Heine University Düsseldorf · DEKymab (United Kingdom) · GBLondon School of Hygiene & Tropical Medicine · GBQueen Mary University of London · GBUganda Virus Research Institute · UGUniversity of Exeter · GB

Funding

WORK ORDER 126643 B539 EXPAND IC SUITE75N91019D00024 · NIAID · LEIDOS BIOMEDICAL RESEARCH, INC. · PI BRISCOE, LYNN · 2019 to 2025
$3932.6M
CCR NIH HHS HHSN261200800001CMedical Research Council MR/S003711/1Medical Research Council MR/S003711/2NCI NIH HHS 75N91019D00024NCI NIH HHS HHSN261200800001EWellcome TrustWellcome Trust WT090132Wellcome Trust WT098051
6 · The paper itself

Abstract

Kaposi's sarcoma-associated herpesvirus (KSHV) and Epstein-Barr Virus (EBV) establish life-long infections and are associated with malignancies. Striking geographic variation in incidence and the fact that virus alone is insufficient to cause disease, suggests other co-factors are involved. Here we present epidemiological analysis and genome-wide association study (GWAS) in 4365 individuals from an African population cohort, to assess the influence of host genetic and non-genetic factors on virus antibody responses. EBV/KSHV co-infection (OR = 5.71(1.58-7.12)), HIV positivity (OR = 2.22(1.32-3.73)) and living in a more rural area (OR = 1.38(1.01-1.89)) are strongly associated with immunogenicity. GWAS reveals associations with KSHV antibody response in the HLA-B/C region (p = 6.64 × 10

Indexed as

AdolescentAdultAntibodies, ViralAntigens, ViralCapsid ProteinsCoinfectionDisease ResistanceEpstein-Barr Virus InfectionsEpstein-Barr Virus Nuclear AntigensFemaleGene ExpressionGenome-Wide Association StudyHenipavirus InfectionsHerpesvirus 4, HumanHerpesvirus 8, HumanHIVAntibodies, ViralAntigens, ViralCapsid ProteinsEBV-encoded nuclear antigen 1Epstein-Barr viral capsid antigenEpstein-Barr Virus Nuclear AntigensHLA-DQA1 antigenHLA-DQ alpha-Chains

Identifiers

PMID32737300
PMCPMC7395761
OpenAlexW3046601425

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.