Evidence map›Paper›PMID 32755048›Full record

ArticleAlzheimer's & dementia : the journal of the Alzheimer's Association2020

Genome-wide transcriptome analysis identifies novel dysregulated genes implicated in Alzheimer's pathology.

Kwangsik Nho, Kelly Nudelman, Mariet Allen, Angela Hodges, Sungeun Kim, Shannon L Risacher, Liana G Apostolova, Kuang Lin, Katie Lunnon, Xue Wang and 15 more

Open access · greenAbstract read
In one paragraph

Article in Alzheimer's & dementia : the journal of the Alzheimer's Association, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed, 2 pooled it
4.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 2 syntheses or guidelines pooled it, 50 citations in OpenAlex.

  1. Meta-Analysis of Transcriptomic Studies of Blood and Six Brain Regions Identifies a Consensus of 15 Cross-Tissue Mechanisms in Alzheimer's Disease and Suggests an Origin of Cross-Study Heterogeneity.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 12 institutions in 2 countries.

Kwangsik NhoCenter for Neuroimaging, Department of Radiology and Imaging Sciences, Indiana University School of Medicine, Indianapolis, Indiana.
Kelly NudelmanCenter for Neuroimaging, Department of Radiology and Imaging Sciences, Indiana University School of Medicine, Indianapolis, Indiana.
Mariet AllenDepartment of Neuroscience, Mayo Clinic Florida, Jacksonville, Florida.
Angela HodgesPsychology & Neuroscience, Institute of Psychiatry, King's college London, London, UK.
Sungeun KimCenter for Neuroimaging, Department of Radiology and Imaging Sciences, Indiana University School of Medicine, Indianapolis, Indiana.
Shannon L RisacherCenter for Neuroimaging, Department of Radiology and Imaging Sciences, Indiana University School of Medicine, Indianapolis, Indiana.
Liana G ApostolovaCenter for Neuroimaging, Department of Radiology and Imaging Sciences, Indiana University School of Medicine, Indianapolis, Indiana.
Kuang LinPsychology & Neuroscience, Institute of Psychiatry, King's college London, London, UK.
Katie LunnonUniversity of Exeter Medical School, Exeter, UK.
Xue WangDepartment of Health Sciences Research, Mayo Clinic Florida, Jacksonville, Florida.
Jeremy D BurgessDepartment of Neuroscience, Mayo Clinic Florida, Jacksonville, Florida.
Nilüfer Ertekin-TanerDepartment of Neuroscience, Mayo Clinic Florida, Jacksonville, Florida.
Ronald C PetersenDepartment of Neurology, Mayo Clinic Minnesota, Rochester, Minnesota.
Lisu WangBristol-Meyers Squibb, Wallingford, Connecticut.
Zhenhao QiBristol-Meyers Squibb, Wallingford, Connecticut.
Aiqing HeBristol-Meyers Squibb, Wallingford, Connecticut.
Isaac NeuhausBristol-Meyers Squibb, Wallingford, Connecticut.
Vishal PatelBristol-Meyers Squibb, Wallingford, Connecticut.
Tatiana ForoudCenter for Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis, Indiana.
Kelley M FaberDepartment of Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, Indiana.
Simon LovestoneDepartment of Psychiatry, University of Oxford, London, UK.
Andrew SimmonsPsychology & Neuroscience, Institute of Psychiatry, King's college London, London, UK.
Michael W WeinerDepartments of Radiology, Medicine, and Psychiatry, University of California-San Francisco, San Francisco, California.
Andrew J SaykinCenter for Neuroimaging, Department of Radiology and Imaging Sciences, Indiana University School of Medicine, Indianapolis, Indiana.
Alzheimer's Disease Neuroimaging Initiative
Bristol-Myers Squibb (United States) · USIndiana University School of MedicineJacksonville College · USKing's College London · GBIndiana University – Purdue University Indianapolis · USAlzheimer’s Disease Neuroimaging Initiative · USMayo Clinic · USMayo Clinic in Florida · USSan Francisco VA Medical Center · USState University of New York at Oswego · USUniversity of Exeter · GBUniversity of Oxford · GB

Funding

Project 1U19AG024904 · NIA · NORTHERN CALIFORNIA INSTITUTE/RES/EDU · PI MONICA G. RIVERA-MINDT · 2016 to 2026
$226.7M
Alzheimer's Disease Neuroimaging Initiative - SupplementU01AG024904 · NIA · NORTHERN CALIFORNIA INSTITUTE RES &EDUC · PI WEINER, MICHAEL W · 2004 to 2015
$121.0M
National Centralized Repository for Alzheimer's Disease and Related Dementias (NCRAD)U24AG021886 · NIA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI TATIANA M. FOROUD · 2002 to 2026
$119.8M
Early Onset AD Consortium - the LEAD Study (LEADS)U01AG057195 · NIA · INDIANA UNIVERSITY INDIANAPOLIS · PI APOSTOLOVA, LIANA G, CARRILLO, MARIA C · 2018 to 2023
$70.3M
SUPPLEMENT TO ALZHEIMERS DISEASE PATIENT REGISTRYU01AG006786 · NIA · MAYO CLINIC ROCHESTER · PI GRAFF-RADFORD, JONATHAN, JACK, CLIFFORD R. · 1986 to 2023
$49.6M
Research Education ComponentP30AG010133 · NIA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI SAYKIN, ANDREW J · 1991 to 2020
$37.3M
Integrating the exposome and methylome to inform brain molecular changes in ADRD across established diverse cohorts.U01AG046139 · NIA · UNIVERSITY OF FLORIDA · PI ERTEKIN-TANER, NILUFER, FUNK, CORY · 2013 to 2022
$24.6M
Indiana Clinical and Translational Sciences InstituteUL1TR001108 · NCATS · INDIANA UNIVERSITY INDIANAPOLIS · PI DENNE, SCOTT C., SHEKHAR, ANANTHA · 2013 to 2017
$23.3M
Ultrascale Machine Learning to Empower Discovery in Alzheimers Disease BiobanksU01AG068057 · NIA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Christos Davatzikos, Heng Huang · 2020 to 2026
$20.7M
Pharmacogenomics of Statin TherapyP50GM115318 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KRAUSS, RONALD M · 2015 to 2019
$14.0M
Integrative translational discovery of vascular risk factors in aging and dementiaRF1AG051504 · NIA · MAYO CLINIC JACKSONVILLE · PI BU, GUOJUN, ERTEKIN-TANER, NILUFER · 2015 to 2019
$9.8M
Memory Circuitry in MCI and Early Alzheimer’s Disease Prodrome: Molecular DriversR01AG019771 · NIA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI SAYKIN, ANDREW J · 2001 to 2021
$6.9M
DOD W81XWH-12-2-0012NCATS NIH HHS UL1 TR001108NIA NIH HHS K01 AG049050NIA NIH HHS P30 AG010133NIA NIH HHS R01 AG019771NIA NIH HHS R01 AG061796NIA NIH HHS R03 AG050856NIA NIH HHS R03 AG054936NIA NIH HHS RF1 AG051504NIA NIH HHS U01 AG006786NIA NIH HHS U01 AG024904NIA NIH HHS U01 AG046139NIA NIH HHS U01 AG057195NIA NIH HHS U01 AG068057NIA NIH HHS U19 AG024904NIA NIH HHS U24 AG021886NIGMS NIH HHS P50 GM115318NLM NIH HHS R01 LM011360NLM NIH HHS R01 LM012535
6 · The paper itself

Abstract

introductionAbnormal gene expression patterns may contribute to the onset and progression of late-onset Alzheimer's disease (LOAD).

methodsWe performed transcriptome-wide meta-analysis (N = 1440) of blood-based microarray gene expression profiles as well as neuroimaging and cerebrospinal fluid (CSF) endophenotype analysis.

resultsWe identified and replicated five genes (CREB5, CD46, TMBIM6, IRAK3, and RPAIN) as significantly dysregulated in LOAD. The most significantly altered gene, CREB5, was also associated with brain atrophy and increased amyloid beta (Aβ) accumulation, especially in the entorhinal cortex region. cis-expression quantitative trait loci mapping analysis of CREB5 detected five significant associations (P < 5 × 10 DISCUSSION: RNA from peripheral blood indicated a differential gene expression pattern in LOAD. Genes identified have been implicated in biological processes relevant to Alzheimer's disease. CREB, in particular, plays a key role in nervous system development, cell survival, plasticity, and learning and memory.

Indexed as

Gene Expression ProfilingAgedAlzheimer DiseaseAmyloid beta-PeptidesAniline CompoundsAtrophyBrainCyclic AMP Response Element-Binding Protein AEntorhinal CortexEthylene GlycolsFemaleGenotyping TechniquesHumansMalePositron-Emission TomographyAmyloid beta-PeptidesAniline CompoundsCREB5 protein, humanCyclic AMP Response Element-Binding Protein AEthylene GlycolsflorbetapirADNIAlzheimer's diseaseamyloid βCREB5imaging geneticsmicroarray gene expression

Identifiers

PMID32755048
PMCPMC7541709
OpenAlexW3013706956

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.