Evidence map›Paper›PMID 32762776›Full record

ArticleGenome biology2020

The RNA-binding protein SERBP1 functions as a novel oncogenic factor in glioblastoma by bridging cancer metabolism and epigenetic regulation.

Adam Kosti, Patricia Rosa de Araujo, Wei-Qing Li, Gabriela D A Guardia, Jennifer Chiou, Caihong Yi, Debashish Ray, Fabiana Meliso, Yi-Ming Li, Talia Delambre and 21 more

Open access · goldAbstract read
In one paragraph

Article in Genome biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 125 citations in OpenAlex.

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  14. TheBiomolecular NMR assignments · 2025
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5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

31 authors at 7 institutions in 4 countries.

Adam KostiChildren's Cancer Research Institute, UT Health San Antonio, San Antonio, TX, 78229, USA.
Patricia Rosa de AraujoChildren's Cancer Research Institute, UT Health San Antonio, San Antonio, TX, 78229, USA.
Wei-Qing LiChildren's Cancer Research Institute, UT Health San Antonio, San Antonio, TX, 78229, USA.
Gabriela D A GuardiaCentro de Oncologia Molecular, Hospital Sírio-Libanês, São Paulo, São Paulo, 01309-060, Brazil.
Jennifer ChiouDepartment of Nutritional Sciences, Dell Pediatric Research Institute, Dell Medical School, The University of Texas at Austin, Austin, TX, 78712, USA.
Caihong YiChildren's Cancer Research Institute, UT Health San Antonio, San Antonio, TX, 78229, USA.
Debashish RayDonnelly Centre, University of Toronto, Toronto, ON, M5S 3E1, Canada.
Fabiana MelisoCentro de Oncologia Molecular, Hospital Sírio-Libanês, São Paulo, São Paulo, 01309-060, Brazil.
Yi-Ming LiShanghai Changzheng Hospital, Second Military Medical University, Shanghai, China.
Talia DelambreChildren's Cancer Research Institute, UT Health San Antonio, San Antonio, TX, 78229, USA.
Mei QiaoChildren's Cancer Research Institute, UT Health San Antonio, San Antonio, TX, 78229, USA.
Suzanne S BurnsChildren's Cancer Research Institute, UT Health San Antonio, San Antonio, TX, 78229, USA.
Franziska K LorbeerChildren's Cancer Research Institute, UT Health San Antonio, San Antonio, TX, 78229, USA.
Fanny GeorgiChildren's Cancer Research Institute, UT Health San Antonio, San Antonio, TX, 78229, USA.
Markus FlosbachChildren's Cancer Research Institute, UT Health San Antonio, San Antonio, TX, 78229, USA.
Sarah KlinnertChildren's Cancer Research Institute, UT Health San Antonio, San Antonio, TX, 78229, USA.
Anne JenseitChildren's Cancer Research Institute, UT Health San Antonio, San Antonio, TX, 78229, USA.
Xiufen LeiChildren's Cancer Research Institute, UT Health San Antonio, San Antonio, TX, 78229, USA.
Carolina Romero SandovalChildren's Cancer Research Institute, UT Health San Antonio, San Antonio, TX, 78229, USA.
Kevin HaDonnelly Centre, University of Toronto, Toronto, ON, M5S 3E1, Canada.
Hong ZhengDonnelly Centre, University of Toronto, Toronto, ON, M5S 3E1, Canada.
Renu PandeyChildren's Cancer Research Institute, UT Health San Antonio, San Antonio, TX, 78229, USA.
Aleksandra GruslovaDepartment of Medicine, UT Health San Antonio, San Antonio, TX, 78229, USA.
Yogesh K GuptaChildren's Cancer Research Institute, UT Health San Antonio, San Antonio, TX, 78229, USA.
Andrew BrennerMays Cancer Center, UT Health San Antonio, San Antonio, TX, 78229, USA.
Erzsebet KokovayDepartment of Cell Systems and Anatomy, UT Health San Antonio, San Antonio, TX, 78229, USA.
Timothy R HughesDonnelly Centre, University of Toronto, Toronto, ON, M5S 3E1, Canada.
Quaid D MorrisDonnelly Centre, University of Toronto, Toronto, ON, M5S 3E1, Canada.
Pedro A F GalanteCentro de Oncologia Molecular, Hospital Sírio-Libanês, São Paulo, São Paulo, 01309-060, Brazil. pgalante@mochsl.org.br.
Stefano TizianiDepartment of Nutritional Sciences, Dell Pediatric Research Institute, Dell Medical School, The University of Texas at Austin, Austin, TX, 78712, USA. tiziani@austin.utexas.edu.
Luiz O F PenalvaChildren's Cancer Research Institute, UT Health San Antonio, San Antonio, TX, 78229, USA. penalva@uthscsa.edu.ORCID 0000-0003-4491-6769
The University of Texas Health Science Center at Houston · USThe University of Texas Health Science Center at San Antonio · USUniversity of Toronto · CAHospital Sírio-Libanês · BRSecond Military Medical University · CNThe University of Texas at Austin · USCanadian Institute for Advanced Research · CA

Funding

Computational Methods for Deep Sequencing Based RBP Binding Motif CharacterizatioR01HG006015 · NHGRI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI PENALVA, LUIZ OTAVIO, SMITH, ANDREW DAVID · 2011 to 2017
$2.6M
NHGRI NIH HHS R01 HG006015NIH HHS 2R01 HG006015
6 · The paper itself

Abstract

backgroundRNA-binding proteins (RBPs) function as master regulators of gene expression. Alterations in RBP expression and function are often observed in cancer and influence critical pathways implicated in tumor initiation and growth. Identification and characterization of oncogenic RBPs and their regulatory networks provide new opportunities for targeted therapy.

resultsWe identify the RNA-binding protein SERBP1 as a novel regulator of glioblastoma (GBM) development. High SERBP1 expression is prevalent in GBMs and correlates with poor patient survival and poor response to chemo- and radiotherapy. SERBP1 knockdown causes delay in tumor growth and impacts cancer-relevant phenotypes in GBM and glioma stem cell lines. RNAcompete identifies a GC-rich region as SERBP1-binding motif; subsequent genomic and functional analyses establish SERBP1 regulation role in metabolic routes preferentially used by cancer cells. An important consequence of these functions is SERBP1 impact on methionine production. SERBP1 knockdown decreases methionine levels causing a subsequent reduction in histone methylation as shown for H3K27me3 and upregulation of genes associated with neurogenesis, neuronal differentiation, and function. Further analysis demonstrates that several of these genes are downregulated in GBM, potentially through epigenetic silencing as indicated by the presence of H3K27me3 sites.

conclusionsSERBP1 is the first example of an RNA-binding protein functioning as a central regulator of cancer metabolism and indirect modulator of epigenetic regulation in GBM. By bridging these two processes, SERBP1 enhances glioma stem cell phenotypes and contributes to GBM poorly differentiated state.

Indexed as

AnimalsBrain NeoplasmsEpigenesis, GeneticFemaleGlioblastomaHumansMaleMiceNeurogenesisPhenotypePrognosisRNA-Binding ProteinsUnited StatesRNA-Binding ProteinsSERBP1 protein, humanCancer metabolismEpigenetic regulationGBMOne carbon cycleRNA-binding proteinSERBP1

Identifiers

PMID32762776
PMCPMC7412812
OpenAlexW3048108137

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.