Evidence map›Paper›PMID 32804369›Full record

SynthesisMethods in molecular biology (Clifton, N.J.)2021

Leverage Large-Scale Biological Networks to Decipher the Genetic Basis of Human Diseases Using Machine Learning.

Hao Wang, Jiaxin Yang, Jianrong Wang

Open access · greenAbstract readSystematic Review
In one paragraph

Synthesis in Methods in molecular biology (Clifton, N.J.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.8field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Hao WangDepartment of Computational Mathematics, Science and Engineering, Michigan State University, East Lansing, MI, USA.
Jiaxin YangDepartment of Computational Mathematics, Science and Engineering, Michigan State University, East Lansing, MI, USA.
Jianrong WangDepartment of Computational Mathematics, Science and Engineering, Michigan State University, East Lansing, MI, USA. wangj164@msu.edu.
Michigan State University · US

Funding

Statistical modeling of long-range chromatin interactions on gene regulation and underlying molecularR01GM131398 · NIGMS · MICHIGAN STATE UNIVERSITY · PI WANG, JIANRONG · 2018 to 2021
$1.3M
NIGMS NIH HHS R01 GM131398
6 · The paper itself

Abstract

A fundamental question in precision medicine is to quantitatively decode the genetic basis of complex human diseases, which will enable the development of predictive models of disease risks based on personal genome sequences. To account for the complex systems within different cellular contexts, large-scale regulatory networks are critical components to be integrated into the analysis. Based on the fast accumulation of multiomics and disease genetics data, advanced machine learning algorithms and efficient computational tools are becoming the driving force in predicting phenotypes from genotypes, identifying potential causal genetic variants, and revealing disease mechanisms. Here, we review the state-of-the-art methods for this topic and describe a computational pipeline that assembles a series of algorithms together to achieve improved disease genetics prediction through the delineation of regulatory circuitry step by step.

Indexed as

AlgorithmsComputational BiologyGenetic Predisposition to DiseaseGenetic VariationGenomeGenotypeHumansMachine LearningNeural Networks, ComputerPhenotypeDisease mechanismsFine-mappingGenetic variantsMultiomicsRegulatory networks

Identifiers

PMID32804369
PMCPMC7433890
OpenAlexW3080296708

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.