Evidence map›Paper›PMID 32838940›Full record

ArticleVirology2020

DNA repair gene expression is increased in HPV positive head and neck squamous cell carcinomas.

Andrew J Holcomb, Laura Brown, Ossama Tawfik, Rashna Madan, Yelizaveta Shnayder, Sufi Mary Thomas, Nicholas A Wallace

Open access · greenAbstract read
In one paragraph

Article in Virology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.7field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Andrew J HolcombThe University of Kansas Medical Center, Department of Otolaryngology, Head and Neck Surgery, 3901 Rainbow Boulevard, Kansas City, KS, 66160, USA.
Laura BrownThe University of Kansas Medical Center, Department of Pathology and Lab Medicine, 3901 Rainbow Boulevard, Kansas City, KS 66160, USA.
Ossama TawfikThe University of Kansas Medical Center, Department of Pathology and Lab Medicine, 3901 Rainbow Boulevard, Kansas City, KS 66160, USA.
Rashna MadanThe University of Kansas Medical Center, Department of Pathology and Lab Medicine, 3901 Rainbow Boulevard, Kansas City, KS 66160, USA.
Yelizaveta ShnayderThe University of Kansas Medical Center, Department of Otolaryngology, Head and Neck Surgery, 3901 Rainbow Boulevard, Kansas City, KS, 66160, USA.
Sufi Mary ThomasThe University of Kansas Medical Center, Department of Otolaryngology, Head and Neck Surgery, 3901 Rainbow Boulevard, Kansas City, KS, 66160, USA.
Nicholas A WallaceKansas State University, Department of Biology, 116 Ackert Hall, Manhattan, KS, 66506, USA. Electronic address: nwallac@ksu.edu.
University of Kansas Medical Center · USKansas State University · US

Funding

Mentoring CoreP20GM103418 · NIGMS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI Douglas E Wright · 2012 to 2026
$63.0M
Transgenic & Gene-Targeting Shared ResourceP30CA168524 · NCI · UNIVERSITY OF KANSAS MEDICAL CENTER · PI ROY A. JENSEN · 2012 to 2026
$40.1M
Role of autophagy in the tumor microenvironmentR01CA227838 · NCI · UNIVERSITY OF KANSAS MEDICAL CENTER · PI THOMAS, SUFI MARY · 2019 to 2023
$1.9M
NCI NIH HHS P30 CA168524NCI NIH HHS R01 CA227838NIGMS NIH HHS P20 GM103418
6 · The paper itself

Abstract

The incidence of head and neck squamous cell carcinomas (HNSCCs) is rising in developed countries. This is driven by an increase in HNSCCs caused by high-risk human papillomavirus (HPV) infections or HPV + HNSCCs. Compared to HNSCCs not caused by HPV (HPV- HNSCCs), HPV + HNSCCs are more responsive to therapy and associated with better oncologic outcomes. As a result, the HPV status of an HNSCC is an important determinant in medical management. One method to determine the HPV status of an HNSCC is increased expression of p16 caused by the HPV E7 oncogene. We identified novel expression changes in HPV + HNSCCs. A comparison of gene expression among HPV+ and HPV- HNSCCs in The Cancer Genome Atlas demonstrated increased DNA repair gene expression in HPV + HNSCCs. Further, DNA repair gene expression correlated with HNSCC survival. Immunohistochemical analysis of a novel HNSCC microarray confirmed that DNA repair protein abundance is elevated in HPV + HNSCCs.

Indexed as

AdultAgedAlphapapillomavirusBRCA1 ProteinDNA RepairFemaleHumansMaleMiddle AgedPapillomavirus E7 ProteinsPapillomavirus InfectionsReplication Protein ASquamous Cell Carcinoma of Head and NeckUbiquitin-Conjugating EnzymesBRCA1 ProteinBRCA1 protein, humanPapillomavirus E7 ProteinsReplication Protein ARPA1 protein, humanUBE2A protein, humanUbiquitin-Conjugating Enzymes

Identifiers

PMID32838940
PMCPMC7460718
OpenAlexW3044287486

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.