Evidence map›Paper›PMID 32873648›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

POLQ suppresses interhomolog recombination and loss of heterozygosity at targeted DNA breaks.

Luther Davis, Kevin J Khoo, Yinbo Zhang, Nancy Maizels

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
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  7. Multifaceted Nature of DNA Polymerase θ.International journal of molecular sciences · 2023
    Review
  8. Review
  9. Genome Protection by DNA Polymerase θ.Annual review of genetics · 2022
    Review
  10. Article
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  12. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Luther DavisDepartment of Immunology, University of Washington School of Medicine, Seattle, WA 98195.ORCID 0000-0002-2346-3898
Kevin J KhooDepartment of Immunology, University of Washington School of Medicine, Seattle, WA 98195.ORCID 0000-0001-8658-3259
Yinbo ZhangDepartment of Immunology, University of Washington School of Medicine, Seattle, WA 98195.ORCID 0000-0002-6958-2534
Nancy MaizelsDepartment of Immunology, University of Washington School of Medicine, Seattle, WA 98195; maizels@u.washington.edu.ORCID 0000-0003-0923-4279
University of Washington · US

Funding

Genomic Instability at DNA NicksR01CA183967 · NCI · UNIVERSITY OF WASHINGTON · PI MAIZELS, NANCY · 2014 to 2018
$1.6M
Mechanisms of loss of heterozygosity in cancerR21CA190675 · NCI · UNIVERSITY OF WASHINGTON · PI MAIZELS, NANCY · 2015 to 2016
$370k
NCI NIH HHS R01 CA183967NCI NIH HHS R21 CA190675
6 · The paper itself

Abstract

Interhomolog recombination (IHR) occurs spontaneously in somatic human cells at frequencies that are low but sufficient to ameliorate some genetic diseases caused by heterozygous mutations or autosomal dominant mutations. Here we demonstrate that DNA nicks or double-strand breaks (DSBs) targeted by CRISPR-Cas9 to both homologs can stimulate IHR and associated copy-neutral loss of heterozygosity (cnLOH) in human cells. The frequency of IHR is 10-fold lower at nicks than at DSBs, but cnLOH is evident in a greater fraction of recombinants. IHR at DSBs occurs predominantly via reciprocal end joining. At DSBs, depletion of POLQ caused a dramatic increase in IHR and in the fraction of recombinants exhibiting cnLOH, suggesting that POLQ promotes end joining

Indexed as

DNA Breaks, Double-StrandedRecombinational DNA RepairCell Line, TumorCRISPR-Cas SystemsDNA Breaks, Single-StrandedDNA-Directed DNA PolymeraseDNA End-Joining RepairDNA LigasesDNA Polymerase thetaHeterozygoteHumansLoss of HeterozygosityMutationRecombination, GeneticDNA-Directed DNA PolymeraseDNA LigasesDNA Polymerase thetaDNA nickdouble-strand breakgene editinggene therapypolymerase

Identifiers

PMID32873648
PMCPMC7502765
OpenAlexW3082405675

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.